Assay Design

The assay probe spans an exon junction.

Gene Transcripts

Gene Symbol: Hoxa11os
Entrez Gene ID: 15397
Gene Name: homeobox A11, opposite strand
Gene Aliases: Hoxa11as, Hoxa11s
Chromosome Location: Chr.6: 52245243 - 52249769 on Build GRCm38

Interrogated Sequence		Translated Protein	RNADB ID	Exon Boundary	Assay Location	Amplicon Length
RefSeq	NR_015348.1			4 - 5	1156	72
GenBank mRNA	AK133929.1	-		2 - 3	377	72
	U20366.1	-	LIT1565 Hoxa11as	4 - 5	1156	72
	U20367.1	-	LIT1564 Hoxa11as	2 - 3	724	72
	U20369.1	-	LIT1563 Hoxa11as	2 - 3	361	72

Non Gene Transcripts

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	BQ947522.1	-	2 - 3	487		Chr. 6 - 52245601 - 52249455 [+] on Build GRCm38	72
GenBankmRNA	BB619336.1	-	2 - 3	377		Chr. 6 - 52245999 - 52249352 [+] on Build GRCm38	72
GenBankmRNA	BU514279.1	-	2 - 3	358		Chr. 6 - 52246018 - 52249633 [+] on Build GRCm38	72
GenBankmRNA	CB952841.1	-	2 - 3	409		Chr. 6 - 52245398 - 52249418 [+] on Build GRCm38	72
GenBankmRNA	BU841106.1	-	2 - 3	349		Chr. 6 - 52246027 - 52249637 [+] on Build GRCm38	72
GenBankmRNA	CB321051.1	-	2 - 3	360		Chr. 6 - 52245990 - 52249494 [+] on Build GRCm38	72
GenBankmRNA	BU510551.1	-	2 - 3	341		Chr. 6 - 52246009 - 52249573 [+] on Build GRCm38	72
GenBankmRNA	BU519467.1	-	2 - 3	407		Chr. 6 - 52245969 - 52249498 [+] on Build GRCm38	72

Adjacent Gene Details

	Gene Name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromosome
Upstream	homeobox A11	Hoxa11	Hox-1.9, Hoxa-11	-853.0	Anti-sense	Chr. - 52242105 - 52245810 on Build GRCm38
Downstream	homeobox A13	Hoxa13	Hd, Hox-1.10	9.4kb	Anti-sense	Chr. - 52258853 - 52260880 on Build GRCm38

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