Product Details

SNP ID

rs116053580

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.19:37564648 on Build GRCh38

Set Membership

Context Sequence [VIC/FAM]

GTAAGTTGTGAAGGACATCTAAAGT[C/T]TTTACCACACTGGACACATGTATAG

Phenotype

MIM: 613903

Polymorphism

C/T, Transition Substitution

Allele Nomenclature

Literature Links

ZNF540 PubMed Links

Additional Information

For this assay, SNP(s) [rs16973890] are located under a probe and SNP(s) [rs4802029] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

ZNF540

Gene Name

zinc finger protein 540

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001172225.2	2547	Intron			NP_001165696.1
NM_001172226.2	2547	Intron			NP_001165697.1
NM_152606.4	2547	Intron			NP_689819.1

Gene

ZNF571

Gene Name

zinc finger protein 571

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001290314.1	2547	Missense Mutation	AAC,GAC	N594D	NP_001277243.1
NM_001321272.1	2547	Missense Mutation	AAC,GAC	N594D	NP_001308201.1
NM_016536.4	2547	Missense Mutation	AAC,GAC	N594D	NP_057620.3
XM_011527024.2	2547	Missense Mutation	AAC,GAC	N597D	XP_011525326.1
XM_017026855.1	2547	Missense Mutation	AAC,GAC	N636D	XP_016882344.1
XM_017026856.1	2547	Missense Mutation	AAC,GAC	N597D	XP_016882345.1
XM_017026857.1	2547	Missense Mutation	AAC,GAC	N597D	XP_016882346.1
XM_017026858.1	2547	Missense Mutation	AAC,GAC	N560D	XP_016882347.1
XM_017026859.1	2547	Missense Mutation	AAC,GAC	N560D	XP_016882348.1
XM_017026860.1	2547	Missense Mutation	AAC,GAC	N530D	XP_016882349.1

Gene

ZNF571-AS1

Gene Name

ZNF571 antisense RNA 1

There are no transcripts associated with this gene.

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