Assay Design

The assay probe spans an exon junction.

Gene Transcripts

Gene Symbol
POU6F1
Entrez Gene ID
5463
Gene Name
POU class 6 homeobox 1
Gene Aliases
BRN5, MPOU, TCFB1
Chromosome Location
Chr.12: 51186936 - 51218134 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_026893.1 4 - 5 461 57
XM_017019520.1 XP_016875009.1 3 - 4 343 57
XM_017019521.1 XP_016875010.1 3 - 4 343 57
XM_017019522.1 XP_016875011.1 3 - 4 366 57
XM_017019523.1 XP_016875012.1 1 - 2 76 57
XM_017019524.1 XP_016875013.1 3 - 4 473 57
XM_017019525.1 XP_016875014.1 4 - 5 461 57
XM_017019526.1 XP_016875015.1 3 - 4 366 57
XM_017019527.1 XP_016875016.1 3 - 4 366 57
XM_017019528.1 XP_016875017.1 4 - 5 894 57
GenBank mRNA AK095191.1 - 4 - 5 461 57


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA DA784067.1 - 3 - 4 344 Chr. 12 - 51198548 - 51206817 [-] on Build GRCh38 57
GenBankmRNA DB244012.1 - 3 - 4 366 Chr. 12 - 51197975 - 51217693 [-] on Build GRCh38 57
GenBankmRNA BX475523.1 - 2 - 3 199 Chr. 12 - 51196845 - 51204243 [-] on Build GRCh38 57
GenBankmRNA DA354451.1 - 4 - 5 461 Chr. 12 - 51198571 - 51217693 [-] on Build GRCh38 57


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream transcription factor CP2 TFCP2 LBP1C, LSF, LSF1D, SEF, TFCP2C -25.4kb Sense Chr. - 51093756 - 51173143 on Build GRCh38
Downstream DAZ associated protein 2 DAZAP2 PRTB 38.9kb Anti-sense Chr. - 51238724 - 51246717 on Build GRCh38

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