Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
CCNT1
Entrez Gene ID
904
Gene Name
cyclin T1
Gene Aliases
CCNT, CYCT1, HIVE1
Chromosome Location
Chr.12: 48688458 - 48716998 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001240.3 NP_001231.2 9 - 9 4743 90
NM_001277842.1 NP_001264771.1 8 - 8 4579 90
XM_017020197.1 XP_016875686.1 8 - 8 4254 90
GenBank mRNA AL832083.1 - 1 - 1 1377 90
BX537516.1 - 1 - 1 1589 90


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA DA988244.1 - 1 100 Chr. 12 - 48690330 - 48690893 [-] on Build GRCh38 90
GenBankmRNA DA736796.1 - 1 559 Chr. 12 - 48690644 - 48691352 [-] on Build GRCh38 90
GenBankmRNA CN296743.1 - 1 466 Chr. 12 - 48690709 - 48691259 [-] on Build GRCh38 90
GenBankmRNA DA551955.1 - 1 291 Chr. 12 - 48690591 - 48691084 [-] on Build GRCh38 90
GenBankmRNA DA747489.1 - 1 512 Chr. 12 - 48690742 - 48691305 [-] on Build GRCh38 90
GenBankmRNA DA446353.1 - 1 64 Chr. 12 - 48690283 - 48690857 [-] on Build GRCh38 90
GenBankmRNA AL600700.1 - 1 350 Chr. 12 - 48690643 - 48691142 [-] on Build GRCh38 90
GenBankmRNA DB254797.1 - 1 157 Chr. 12 - 48690376 - 48690950 [-] on Build GRCh38 90
GenBankmRNA DA605423.1 - 1 520 Chr. 12 - 48690764 - 48691311 [-] on Build GRCh38 90
GenBankmRNA DA694513.1 - 1 355 Chr. 12 - 48690576 - 48691148 [-] on Build GRCh38 90
GenBankmRNA BE271408.1 - 354 Chr. - - [-] on Build 90
GenBankmRNA DB118238.1 - 1 69 Chr. 12 - 48690440 - 48690862 [-] on Build GRCh38 90
GenBankmRNA CN296739.1 - 1 360 Chr. 12 - 48690745 - 48691153 [-] on Build GRCh38 90


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream KAT8 regulatory NSL complex subunit 2 KANSL2 C12orf41, NSL2 -6.2kb Sense Chr. - 48653211 - 48682252 on Build GRCh38
Downstream long intergenic non-protein coding RNA 935 LINC00935 33.0kb Anti-sense Chr. - 48727435 - 48765786 on Build GRCh38

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