Product Details

SNP ID

rs143363686

Assay Type

Functionally tested

NCBI dbSNP Submissions

NA

Location

Chr.6:31589883 on Build GRCh38

Set Membership

Context Sequence [VIC/FAM]

GCTGGCGTCATGGCCTCGCACGTCC[C/T]GGATGTGCAGCTCAGCCTGGTGGTC

Phenotype

MIM: 109170 MIM: 600978 MIM: 611550

Polymorphism

C/T, Transition substitution

Allele Nomenclature

Literature Links

LST1 PubMed Links

Gene Details

Gene

LST1

Gene Name

leukocyte specific transcript 1

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001166538.1	497	Intron			NP_001160010.1
NM_007161.3	497	Intron			NP_009092.3
NM_205837.2	497	Intron			NP_995309.2
NM_205838.2	497	Intron			NP_995310.2
NM_205839.2	497	Intron			NP_995311.2
NM_205840.2	497	Intron			NP_995312.2
XM_006715206.3	497	Intron			XP_006715269.1
XM_006715209.3	497	Intron			XP_006715272.1
XM_006715210.3	497	Intron			XP_006715273.1
XM_011514914.2	497	Intron			XP_011513216.1

Gene

LTB

Gene Name

lymphotoxin beta

There are no transcripts associated with this gene.

Gene

NCR3

Gene Name

natural cytotoxicity triggering receptor 3

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001145466.1	497	Missense Mutation	CAG,CGG	Q96R	NP_001138938.1
NM_001145467.1	497	Missense Mutation	CAG,CGG	Q96R	NP_001138939.1
NM_147130.2	497	Missense Mutation	CAG,CGG	Q96R	NP_667341.1
XM_006715049.3	497	Missense Mutation	CAG,CGG	Q96R	XP_006715112.1
XM_011514459.2	497	Missense Mutation	CAG,CGG	Q71R	XP_011512761.1

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