Product Details

SNP ID

rs2979868

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.5:122068962 on Build GRCh38

Set Membership

Context Sequence [VIC/FAM]

GGGGTCGGGGGTTGGTTCTACTATA[A/C]CCAACTCCACACAATATGGGCCATA

Phenotype

MIM: 153455 MIM: 610479

Polymorphism

A/C, Transversion Substitution

Allele Nomenclature

Literature Links

LOX PubMed Links

Additional Information

For this assay, SNP(s) [rs149742794] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

LOX

Gene Name

lysyl oxidase

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001178102.2		Intron			NP_001171573.1
NM_001317073.1		Intron			NP_001304002.1
NM_002317.6		Intron			NP_002308.2

Gene

SRFBP1

Gene Name

serum response factor binding protein 1

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_152546.2		Intron			NP_689759.2
XM_017009111.1		Intron			XP_016864600.1

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