Product Details

SNP ID

rs77505166

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.5:141388424 on Build GRCh38

Set Membership

Context Sequence [VIC/FAM]

TCAGTCCCAGTGATCATTTCTCACT[A/G]ATAAATAAAGAGAAATCAGATGGCA

Phenotype

MIM: 606288 MIM: 606289 MIM: 606290 MIM: 606291 MIM: 606292 MIM: 606293 MIM: 606294 MIM: 606295 MIM: 606299 MIM: 606300 MIM: 606301 MIM: 603058 MIM: 606302

Polymorphism

A/G, Transition Substitution

Allele Nomenclature

Literature Links

PCDHGA1 PubMed Links

Additional Information

For this assay, SNP(s) [rs68033444] are located under a probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

PCDHGA1

Gene Name

protocadherin gamma subfamily A, 1

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_018912.2	540	Intron			NP_061735.1
NM_031993.1	540	Intron			NP_114382.1

Gene

PCDHGA2

Gene Name

protocadherin gamma subfamily A, 2

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_018915.3	540	Intron			NP_061738.1
NM_032009.2	540	Intron			NP_114398.1

Gene

PCDHGA3

Gene Name

protocadherin gamma subfamily A, 3

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_018916.3	540	Intron			NP_061739.2
NM_032011.1	540	Intron			NP_114400.1

Gene

PCDHGA4

Gene Name

protocadherin gamma subfamily A, 4

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_018917.3	540	Intron			NP_061740.2
NM_032053.2	540	Intron			NP_114442.2

Gene

PCDHGA5

Gene Name

protocadherin gamma subfamily A, 5

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_018918.2	540	Intron			NP_061741.1
NM_032054.1	540	Intron			NP_114443.1

Gene

PCDHGA6

Gene Name

protocadherin gamma subfamily A, 6

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_018919.2	540	Intron			NP_061742.1
NM_032086.1	540	Intron			NP_114475.1

Gene

PCDHGA7

Gene Name

protocadherin gamma subfamily A, 7

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_018920.3	540	Intron			NP_061743.1
NM_032087.2	540	Intron			NP_114476.1

Gene

PCDHGA8

Gene Name

protocadherin gamma subfamily A, 8

There are no transcripts associated with this gene.

Gene

PCDHGB1

Gene Name

protocadherin gamma subfamily B, 1

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_018922.2	540	Intron			NP_061745.1
NM_032095.1	540	Intron			NP_115266.1

Gene

PCDHGB2

Gene Name

protocadherin gamma subfamily B, 2

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_018923.2	540	Intron			NP_061746.1
NM_032096.1	540	Intron			NP_115267.1

Gene

PCDHGB3

Gene Name

protocadherin gamma subfamily B, 3

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_018924.4	540	Intron			NP_061747.2
NM_032097.2	540	Intron			NP_115268.2

Gene

PCDHGB4

Gene Name

protocadherin gamma subfamily B, 4

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_003736.2	540	Silent Mutation	CTA,CTG	L180L	NP_003727.1
NM_032098.1	540	Silent Mutation	CTA,CTG	L180L	NP_115269.1

Gene

PCDHGB5

Gene Name

protocadherin gamma subfamily B, 5

There are no transcripts associated with this gene.

View Full Product Details