Product Details

SNP ID

rs12663184

Assay Type

Validated

NCBI dbSNP Submissions

NA

Location

Chr.6:30333823 on Build GRCh38

Set Membership

HapMap Validated

Context Sequence [VIC/FAM]

GATGTGCCTATTTCCAAAATATCCT[C/T]AGAGTGTGTTAACAGCTTCATCAAG

Phenotype

MIM: 605700

Polymorphism

C/T, Transition Substitution

Allele Nomenclature

Literature Links

HCG17 PubMed Links

Additional Information

For this assay, SNP(s) [rs17194852] are located under a probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

HCG17

Gene Name

HLA complex group 17 (non-protein coding)

There are no transcripts associated with this gene.

Gene

HCG18

Gene Name

HLA complex group 18 (non-protein coding)

There are no transcripts associated with this gene.

Gene

TRIM39

Gene Name

tripartite motif containing 39

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_021253.3		Intron			NP_067076.2
NM_172016.2		Intron			NP_742013.1

Gene

TRIM39-RPP21

Gene Name

TRIM39-RPP21 readthrough

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001199119.1		Intron			NP_001186048.1

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