Product Details

SNP ID

rs1197893

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.6:63537839 on Build GRCh38

Set Membership

HapMap

Context Sequence [VIC/FAM]

AGGGCACAATGAGGACACCTCAACC[A/G]CCAAGAATCTGGCGAAAGGGCCACG

Phenotype

MIM: 611470 MIM: 601585

Polymorphism

A/G, Transition Substitution

Allele Nomenclature

Literature Links

LGSN PubMed Links

Additional Information

For this assay, SNP(s) [rs536658418] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

LGSN

Gene Name

lengsin, lens protein with glutamine synthetase domain

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001143940.1		Intron			NP_001137412.1
NM_016571.2		Intron			NP_057655.2
XM_011535889.2		Intron			XP_011534191.1
XM_011535892.2		Intron			XP_011534194.1
XM_017010929.1		Intron			XP_016866418.1
XM_017010930.1		Intron			XP_016866419.1
XM_017010931.1		Intron			XP_016866420.1

Gene

PTP4A1

Gene Name

protein tyrosine phosphatase type IVA, member 1

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_003463.4		Intron			NP_003454.1
XM_011536111.1		Intron			XP_011534413.1
XM_011536112.1		Intron			XP_011534414.1
XM_017011270.1		Intron			XP_016866759.1
XM_017011271.1		Intron			XP_016866760.1
XM_017011272.1		Intron			XP_016866761.1

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