Assay Design

The assay probe spans an exon junction. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
shot
Entrez Gene ID
36542
Gene Name
short stop
Gene Aliases
42/4, CG18076, CG18637, Dmel\CG18076, Dmel_CG18076, Grv, Kak, Shot, Su(Mir)1, grv, kak, kakp, kop, l(2)CA4, l(2)k03010, l(2)k04204, l(2)k05434, l(2)k05821, l(2)k10821, l(2)k15606, shortstop/kakapo
Chromosome Location
Chr.2R: 13864237 - 13942110 on Build Release_6_plus_ISO1_MT
Species Specific ID (Flybase ID)
FBgn0013733
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001144185.2 NP_001137657.1 24 - 25 15645 71
NM_001144186.2 NP_001137658.1 25 - 26 15690 71
NM_001144187.2 NP_001137659.1 24 - 25 15645 71
NM_001144188.2 NP_001137660.1 24 - 25 15868 71
NM_001144189.2 NP_001137661.1 25 - 26 15913 71
NM_001169676.1 NP_001163147.1 18 - 19 14806 71
NM_001169677.1 NP_001163148.1 26 - 27 15750 71
NM_001169678.1 NP_001163149.1 26 - 27 15973 71
NM_001169679.2 NP_001163150.1 23 - 24 15766 71
NM_001259378.1 NP_001246307.1 22 - 23 15694 71
NM_001259379.1 NP_001246308.1 23 - 24 15766 71
NM_001259380.1 NP_001246309.1 27 - 28 15768 71
NM_001259381.1 NP_001246310.1 27 - 28 15810 71
NM_001259382.1 NP_001246311.1 15 - 16 11626 71
NM_001259383.1 NP_001246312.1 23 - 24 15778 71
NM_001259384.1 NP_001246313.1 22 - 23 15694 71
NM_079009.3 NP_523733.2 25 - 26 15913 71
NM_166015.2 NP_725335.1 25 - 26 15690 71
NM_166016.2 NP_725336.1 25 - 26 15690 71
NM_166017.2 NP_725337.1 21 - 22 15013 71
NM_166018.3 NP_725338.1 18 - 19 14806 71
NM_166019.3 NP_725339.1 22 - 23 25741 71

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