Assay Design

The assay probe spans an exon junction. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
CIITA
Entrez Gene ID
4261
Gene Name
class II, major histocompatibility complex, transactivator
Gene Aliases
C2TA, CIITAIV, MHC2TA, NLRA
Chromosome Location
Chr.16: 10866208 - 10941562 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_000246.3 NP_000237.2 2 - 3 333 83
NM_001286402.1 NP_001273331.1 2 - 3 333 83
NM_001286403.1 NP_001273332.1 2 - 3 333 83
NR_104444.1 2 - 3 333 83
XM_006720880.3 XP_006720943.2 2 - 3 511 83
XM_011522484.2 XP_011520786.1 2 - 3 511 83
XM_011522485.2 XP_011520787.1 2 - 3 511 83
XM_011522486.2 XP_011520788.1 2 - 3 513 83
XM_011522487.2 XP_011520789.1 2 - 3 395 83
XM_011522488.2 XP_011520790.1 2 - 3 1742 83
XM_011522489.2 XP_011520791.1 2 - 3 395 83
XM_011522490.2 XP_011520792.1 2 - 3 1743 83
XM_011522491.2 XP_011520793.1 2 - 3 513 83
XM_011522492.2 XP_011520794.1 2 - 3 459 83
XM_011522493.2 XP_011520795.1 2 - 3 459 83
XM_011522494.2 XP_011520796.1 2 - 3 223 83
XM_011522495.2 XP_011520797.1 2 - 3 461 83
XM_011522496.2 XP_011520798.1 2 - 3 461 83
GenBank mRNA AF410154.1 - 2 - 3 338 83
AY084054.1 - 2 - 3 323 83
AY084055.1 - 2 - 3 323 83
AY699071.1 - 1 - 2 128 83
U18259.1 - 2 - 3 338 83
U18288.1 - 2 - 3 315 83
U31931.1 - 2 - 3 200 83
X74301.1 - 2 - 3 315 83

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