Assay Design

The assay probe spans an exon junction.

Gene Transcripts

Gene Symbol
BDNF-AS
Entrez Gene ID
497258
Gene Name
BDNF antisense RNA
Gene Aliases
ANTI-BDNF, BDNF, BDNF-AS1, BDNFOS, NCRNA00049
Chromosome Location
Chr.11: 27506852 - 27698171 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_002832.2 3 - 4 213 109
NR_033314.1 3 - 4 213 109
GenBank mRNA AY054391.4 - 3 - 4 243 109
AY054403.4 - 3 - 4 243 109
AY054405.4 - 3 - 4 243 109
EF689030.1 - 3 - 4 218 109
EF689031.1 - 3 - 4 218 109
EF689032.1 - 3 - 4 218 109
EF689033.1 - 3 - 4 218 109
EF689034.1 - 3 - 4 218 109
EF689035.1 - 3 - 4 218 109
EF689042.1 - 3 - 4 218 109


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA BG707452.1 - 3 - 4 242 Chr. 11 - 27506852 - 27675373 [+] on Build GRCh38 109
GenBankmRNA DB102543.1 - 3 - 4 221 Chr. 11 - 27506844 - 27658410 [+] on Build GRCh38 109
GenBankmRNA DA352679.1 - 2 - 3 130 Chr. 11 - 27506838 - 27659200 [+] on Build GRCh38 109
GenBankmRNA DA347710.1 - 3 - 4 213 Chr. 11 - 27506852 - 27658439 [+] on Build GRCh38 109


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream microRNA 8087 MIR8087 hsa-mir-8087 -69.2kb Anti-sense Chr. - 27514970 - 27515047 on Build GRCh38
Downstream brain derived neurotrophic factor BDNF ANON2, BULN2 14.9kb Anti-sense Chr. - 27654893 - 27722058 on Build GRCh38

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