Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
QKI
Entrez Gene ID
9444
Gene Name
QKI, KH domain containing RNA binding
Gene Aliases
Hqk, QK, QK1, QK3, hqkI
Chromosome Location
Chr.6: 163414486 - 163578596 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001301085.1 NP_001288014.1 8 - 8 7229 68
NM_006775.2 NP_006766.1 8 - 8 7253 68
NM_206853.2 NP_996735.1 7 - 7 11926 68
NM_206854.2 NP_996736.1 7 - 7 13205 68
NM_206855.2 NP_996737.1 6 - 6 14152 68
XM_011536258.2 XP_011534560.1 8 - 8 6757 68
XM_011536260.2 XP_011534562.1 7 - 7 7151 68
GenBank mRNA AK096701.1 - 1 - 1 2143 68


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA BQ720286.1 - 1 357 Chr. 6 - 163576030 - 163576875 [+] on Build GRCh38 68
GenBankmRNA AI769169.1 - 1 Chr. 6 - 163576216 - 163576674 [-] on Build GRCh38 68
GenBankmRNA BE502622.1 - 1 Chr. 6 - 163576250 - 163576674 [-] on Build GRCh38 68
GenBankmRNA AA699645.1 - 1 Chr. 6 - 163576226 - 163576668 [-] on Build GRCh38 68
GenBankmRNA F26292.1 - 1 107 Chr. 6 - 163576280 - 163576590 [+] on Build GRCh38 68
GenBankmRNA AI652902.1 - 1 Chr. 6 - 163576250 - 163576674 [-] on Build GRCh38 68
GenBankmRNA AI968394.1 - 1 Chr. 6 - 163576250 - 163576674 [-] on Build GRCh38 68
GenBankmRNA AW470656.1 - 1 Chr. 6 - 163576261 - 163576678 [-] on Build GRCh38 68
GenBankmRNA BX105184.1 - 1 455 Chr. 6 - 163575933 - 163576664 [+] on Build GRCh38 68
GenBankmRNA AI633884.1 - 1 Chr. 6 - 163576125 - 163576676 [-] on Build GRCh38 68
GenBankmRNA BF059524.1 - 1 Chr. 6 - 163576252 - 163576674 [-] on Build GRCh38 68
GenBankmRNA DA390185.1 - 1 317 Chr. 6 - 163576071 - 163576674 [+] on Build GRCh38 68
GenBankmRNA AA454114.1 - 1 Chr. 6 - 163576245 - 163576678 [-] on Build GRCh38 68
GenBankmRNA BE218313.1 - 1 Chr. 6 - 163576124 - 163576675 [-] on Build GRCh38 68
GenBankmRNA BE220865.1 - 1 Chr. 6 - 163576126 - 163576675 [-] on Build GRCh38 68
GenBankmRNA AA657428.1 - 1 191 Chr. 6 - 163576202 - 163576654 [+] on Build GRCh38 68
GenBankmRNA DB327814.1 - 1 Chr. 6 - 163576158 - 163576668 [-] on Build GRCh38 68
GenBankmRNA F35802.1 - 97 Chr. - - [-] on Build 68
GenBankmRNA AI522008.1 - 1 Chr. 6 - 163576124 - 163576676 [-] on Build GRCh38 68
GenBankmRNA DA525534.1 - 1 420 Chr. 6 - 163575967 - 163576538 [+] on Build GRCh38 68
GenBankmRNA AW974930.1 - 275 Chr. - - [-] on Build 68
GenBankmRNA BE503468.1 - 1 Chr. 6 - 163576212 - 163576674 [-] on Build GRCh38 68
GenBankmRNA BE348649.1 - 1 Chr. 6 - 163576130 - 163576678 [-] on Build GRCh38 68
GenBankmRNA DA391639.1 - 1 367 Chr. 6 - 163576020 - 163576605 [+] on Build GRCh38 68
GenBankmRNA AA700831.1 - 1 Chr. 6 - 163576206 - 163576676 [-] on Build GRCh38 68


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream colon adenocarcinoma hypermethylated (non-protein coding) CAHM LINC00468 -160.3kb Anti-sense Chr. - 163413065 - 163413950 on Build GRCh38
Downstream uncharacterized LOC102724152 LOC102724152 87.7kb Anti-sense Chr. - 163664366 - 163671484 on Build GRCh38

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