Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
CADM2
Entrez Gene ID
253559
Gene Name
cell adhesion molecule 2
Gene Aliases
IGSF4D, NECL3, Necl-3, SynCAM 2, synCAM2
Chromosome Location
Chr.3: 84958982 - 86074429 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001167674.1 NP_001161146.1 10 - 10 8200 112
NM_001167675.1 NP_001161147.1 10 - 10 8107 112
NM_001256502.1 NP_001243431.1 11 - 11 7747 112
NM_001256503.1 NP_001243432.1 10 - 10 7597 112
NM_001256504.1 NP_001243433.1 11 - 11 7654 112
NM_001256505.1 NP_001243434.1 10 - 10 7627 112
NM_153184.3 NP_694854.2 10 - 10 7580 112
XM_006713081.3 XP_006713144.1 11 - 11 8090 112
XM_006713082.3 XP_006713145.1 9 - 9 8073 112
XM_017006062.1 XP_016861551.1 12 - 12 8132 112
XM_017006063.1 XP_016861552.1 9 - 9 7660 112
GenBank mRNA BC040985.1 - 1 - 1 2547 112


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA BQ722768.1 - 1 489 Chr. 3 - 86072561 - 86073471 [+] on Build GRCh38 112
GenBankmRNA H41859.1 - 1 172 Chr. 3 - 86072878 - 86073258 [+] on Build GRCh38 112
GenBankmRNA CR745816.1 - 1 173 Chr. 3 - 86072878 - 86073656 [+] on Build GRCh38 112
GenBankmRNA DA360833.1 - 1 316 Chr. 3 - 86072734 - 86073285 [+] on Build GRCh38 112


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream CADM2 antisense RNA 1 CADM2-AS1 -42.5kb Anti-sense Chr. - 85992183 - 86028007 on Build GRCh38
Downstream uncharacterized LOC101927494 LOC101927494 408.3kb Sense Chr. - 86481943 - 86496996 on Build GRCh38

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