Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
NDE1
Entrez Gene ID
54820
Gene Name
nudE neurodevelopment protein 1
Gene Aliases
HOM-TES-87, LIS4, MHAC, NDE, NUDE, NUDE1
Chromosome Location
Chr.16: 15643267 - 15726353 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq XM_017023349.1 XP_016878838.1 9 - 9 2958 88
XM_017023351.1 XP_016878840.1 10 - 10 3037 88
XM_017023353.1 XP_016878842.1 9 - 9 3090 88
XM_017023354.1 XP_016878843.1 8 - 8 2806 88
XM_017023356.1 XP_016878845.1 9 - 9 2994 88
GenBank mRNA AK123247.1 - 2 - 2 2051 88


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA BU935437.1 - 110 Chr. - - [-] on Build 88
GenBankmRNA AA931150.1 - 1 Chr. 16 - 15701478 - 15701913 [-] on Build GRCh38 88
GenBankmRNA AA846844.1 - 1 Chr. 16 - 15701574 - 15701914 [-] on Build GRCh38 88
GenBankmRNA AA564324.1 - 1 Chr. 16 - 15701529 - 15701912 [-] on Build GRCh38 88
GenBankmRNA AA836412.1 - 1 Chr. 16 - 15701533 - 15701914 [-] on Build GRCh38 88
GenBankmRNA AA910659.1 - 1 Chr. 16 - 15701509 - 15701914 [-] on Build GRCh38 88
GenBankmRNA HY254246.1 - 1 Chr. 16 - 15701427 - 15701907 [-] on Build GRCh38 88
GenBankmRNA HY259747.1 - 1 Chr. 16 - 15701403 - 15701907 [-] on Build GRCh38 88
GenBankmRNA BG112775.1 - 1 302 Chr. 16 - 15701332 - 15701913 [+] on Build GRCh38 88
GenBankmRNA AI937245.1 - 1 Chr. 16 - 15701463 - 15701912 [-] on Build GRCh38 88
GenBankmRNA CA941266.1 - 1 Chr. 16 - 15701323 - 15701914 [-] on Build GRCh38 88
GenBankmRNA AA894527.1 - 1 Chr. 16 - 15701479 - 15701913 [-] on Build GRCh38 88
GenBankmRNA AI077433.1 - 1 Chr. 16 - 15701484 - 15701912 [-] on Build GRCh38 88
GenBankmRNA AI498052.1 - 1 Chr. 16 - 15701452 - 15701912 [-] on Build GRCh38 88
GenBankmRNA AI093116.1 - 1 Chr. 16 - 15701464 - 15701914 [-] on Build GRCh38 88
GenBankmRNA AL520689.2 - 1 Chr. 16 - 15700529 - 15701891 [-] on Build GRCh38 88
GenBankmRNA AI623269.1 - 1 Chr. 16 - 15701557 - 15701914 [-] on Build GRCh38 88
GenBankmRNA HY282462.1 - 1 Chr. 16 - 15701447 - 15701914 [-] on Build GRCh38 88
GenBankmRNA HY237405.1 - 1 Chr. 16 - 15701478 - 15701907 [-] on Build GRCh38 88
GenBankmRNA HY270411.1 - 1 Chr. 16 - 15701447 - 15701907 [-] on Build GRCh38 88
GenBankmRNA HY355257.1 - 1 Chr. 16 - 15701476 - 15701907 [-] on Build GRCh38 88
GenBankmRNA HY255084.1 - 1 Chr. 16 - 15701475 - 15701914 [-] on Build GRCh38 88
GenBankmRNA AA837396.1 - 1 Chr. 16 - 15701498 - 15701914 [-] on Build GRCh38 88
GenBankmRNA AA814942.1 - 1 Chr. 16 - 15701519 - 15701914 [-] on Build GRCh38 88
GenBankmRNA BM676775.1 - 1 Chr. 16 - 15701257 - 15701914 [-] on Build GRCh38 88
GenBankmRNA CA941555.1 - 1 358 Chr. 16 - 15701280 - 15701837 [+] on Build GRCh38 88
GenBankmRNA BP431596.1 - 1 158 Chr. 16 - 15701480 - 15701850 [+] on Build GRCh38 88
GenBankmRNA DB367726.1 - 1 Chr. 16 - 15701391 - 15701912 [-] on Build GRCh38 88
GenBankmRNA HY249549.1 - 1 Chr. 16 - 15701436 - 15701907 [-] on Build GRCh38 88
GenBankmRNA HY260310.1 - 1 Chr. 16 - 15701506 - 15701914 [-] on Build GRCh38 88
GenBankmRNA BU738952.1 - 1 Chr. 16 - 15701459 - 15701914 [-] on Build GRCh38 88
GenBankmRNA BQ017339.1 - 1 Chr. 16 - 15701237 - 15701914 [-] on Build GRCh38 88
GenBankmRNA AA729327.1 - 1 Chr. 16 - 15701497 - 15701909 [-] on Build GRCh38 88
GenBankmRNA BM972765.1 - 1 Chr. 16 - 15701281 - 15701914 [-] on Build GRCh38 88
GenBankmRNA HY245260.1 - 1 Chr. 16 - 15701371 - 15701907 [-] on Build GRCh38 88
GenBankmRNA CA418192.1 - 1 Chr. 16 - 15701458 - 15702120 [-] on Build GRCh38 88
GenBankmRNA CA425599.1 - 1 Chr. 16 - 15701282 - 15701921 [-] on Build GRCh38 88
GenBankmRNA DB302598.1 - 1 Chr. 16 - 15701346 - 15701912 [-] on Build GRCh38 88


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream microRNA 484 MIR484 MIRN484, hsa-mir-484, mir-484 -57.7kb Sense Chr. - 15643294 - 15643372 on Build GRCh38
Downstream myosin heavy chain 11 MYH11 AAT4, FAA4, SMHC, SMMHC 1.2kb Anti-sense Chr. - 15703135 - 15857032 on Build GRCh38

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