Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
SNORD48
Entrez Gene ID
26801
Gene Name
small nucleolar RNA, C/D box 48
Gene Aliases
RNU48, U48
Chromosome Location
Chr.6: 31835263 - 31835326 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_002745.1 1 - 1 30 58
GenBank mRNA X96648.1 - 1 - 1 30 58


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA DA093597.1 - 1 378 Chr. 6 - 31834916 - 31835479 [+] on Build GRCh38 58
GenBankmRNA DB277545.1 - 1 378 Chr. 6 - 31834916 - 31835432 [+] on Build GRCh38 58
GenBankmRNA BP313736.1 - 1 377 Chr. 6 - 31834916 - 31835500 [+] on Build GRCh38 58
GenBankmRNA DA660666.1 - 1 378 Chr. 6 - 31834916 - 31835484 [+] on Build GRCh38 58
GenBankmRNA DB146505.1 - 1 381 Chr. 6 - 31834916 - 31835461 [+] on Build GRCh38 58
GenBankmRNA DA767991.1 - 1 377 Chr. 6 - 31834916 - 31835566 [+] on Build GRCh38 58
GenBankmRNA DA429597.1 - 1 379 Chr. 6 - 31834916 - 31835413 [+] on Build GRCh38 58
GenBankmRNA DA661515.1 - 1 378 Chr. 6 - 31834916 - 31835498 [+] on Build GRCh38 58
GenBankmRNA N77655.1 - 1 165 Chr. 6 - 31835126 - 31835450 [+] on Build GRCh38 58
GenBankmRNA DB164445.1 - 1 379 Chr. 6 - 31834915 - 31835490 [+] on Build GRCh38 58
GenBankmRNA DA768889.1 - 1 382 Chr. 6 - 31834914 - 31835429 [+] on Build GRCh38 58
GenBankmRNA DB288994.1 - 1 380 Chr. 6 - 31834916 - 31835466 [+] on Build GRCh38 58
GenBankmRNA DB278400.1 - 1 380 Chr. 6 - 31834916 - 31835406 [+] on Build GRCh38 58
GenBankmRNA BU609005.1 - 3 Chr. 6 - 31835187 - 31839764 [-] on Build GRCh38 58
GenBankmRNA DA191557.1 - 1 384 Chr. 6 - 31834914 - 31835461 [+] on Build GRCh38 58
GenBankmRNA HY157642.1 - 1 386 Chr. 6 - 31834908 - 31835420 [+] on Build GRCh38 58
GenBankmRNA BM847216.1 - 1 378 Chr. 6 - 31834916 - 31835451 [+] on Build GRCh38 58


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream chromosome 6 open reading frame 48 C6orf48 D6S57, G8 Sense Chr. - 31834915 - 31839766 on Build GRCh38
Downstream small nucleolar RNA, C/D box 52 SNORD52 RNU52, U52 1.8kb Sense Chr. - 31837076 - 31837139 on Build GRCh38

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