Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
Zc3hav1l
Entrez Gene ID
209032
Gene Name
zinc finger CCCH-type, antiviral 1-like
Gene Aliases
B130055L09Rik, E430016P22Rik
Chromosome Location
Chr.6: 38287394 - 38299259 on Build GRCm38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_172467.3 NP_766055.1 4 - 4 6108 110
GenBank mRNA AK045178.1 - 1 - 1 350 110
AK053232.1 - 2 - 2 1082 110
AK088451.1 - 1 - 1 1459 110


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA BP771363.1 - 1 Chr. 6 - 38287461 - 38288048 [+] on Build GRCm38 110
GenBankmRNA BY762552.1 - 1 259 Chr. 6 - 38287394 - 38288081 [-] on Build GRCm38 110
GenBankmRNA AA217686.1 - 1 163 Chr. 6 - 38287531 - 38287986 [-] on Build GRCm38 110
GenBankmRNA BB642958.1 - 1 346 Chr. 6 - 38287488 - 38288168 [-] on Build GRCm38 110
GenBankmRNA BB535978.2 - 1 208 Chr. 6 - 38287395 - 38288031 [-] on Build GRCm38 110
GenBankmRNA BB295976.2 - 1 298 Chr. 6 - 38287394 - 38288087 [-] on Build GRCm38 110
GenBankmRNA CD802827.1 - 1 191 Chr. 6 - 38287461 - 38287976 [-] on Build GRCm38 110


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream RIKEN cDNA D630045J12 gene D630045J12Rik Kiaa1549, mKIAA1549 -33.4kb Sense Chr. - 38123174 - 38254009 on Build GRCm38
Downstream zinc finger CCCH type, antiviral 1 Zc3hav1 1200014N16Rik, 2900058M19Rik, 9130009D18Rik, 9830115L13Rik, ARTD13, D6Bwg1452e, ZAP 17.1kb Sense Chr. - 38305286 - 38355840 on Build GRCm38

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