Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol: TTC39C
Entrez Gene ID: 125488
Gene Name: tetratricopeptide repeat domain 39C
Gene Aliases: C18orf17, HsT2697
Chromosome Location: Chr.18: 23992773 - 24135952 on Build GRCh38

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Amplicon Length
RefSeq	XM_005258198.4	XP_005258255.1	16 - 16		101
	XM_011525814.2	XP_011524116.1	13 - 13		101
	XM_017025550.1	XP_016881039.1	16 - 16		101

Non Gene Transcripts

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	AI871745.1	-	1			Chr. 18 - 24135313 - 24135854 [+] on Build GRCh38	101
GenBankmRNA	HY218866.1	-	1	191		Chr. 18 - 24135547 - 24135969 [-] on Build GRCh38	101
GenBankmRNA	AV656442.1	-	2			Chr. 18 - 24135499 - 24135919 [+] on Build GRCh38	101
GenBankmRNA	AF363068.1	-		51		Chr. - - [-] on Build	101
GenBankmRNA	CA774026.1	-	1	190		Chr. 18 - 24135430 - 24135968 [-] on Build GRCh38	101

Adjacent Gene Details

	Gene Name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromosome
Upstream	TTC39C antisense RNA 1	TTC39C-AS1		-119.9kb	Anti-sense	Chr. - 23994213 - 24015460 on Build GRCh38
Downstream	calcium binding tyrosine phosphorylation regulated	CABYR	CABYRa, CABYRc, CABYRc/d, CABYRe, CBP86, CT88, FSP-2, FSP2	3.1kb	Sense	Chr. - 24138956 - 24161600 on Build GRCh38

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