Product Details

Assay Reference Genome
Location

Chr.2:166198514 on build GRCh38
Cytoband
2q24.3
Species
Homo sapiens
Variation Type
Copy Number

Additional Information

For this assay, SNP(s) [rs111510277] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Target Gene Details

Entrez Gene ID
101929680
Gene Symbol
LOC101929680
Gene Name
uncharacterized LOC101929680
Gene Aliases
Location
Chr.2:166081531-166301784 on build GRCh38
Assay Gene Location
Within Intron 3
Gene Symbol Transcript Accession Exon Location Assay Location Protein ID
LOC101929680 NR_110260.1
KM096550.1
KM096551.1
Entrez Gene ID
6335
Gene Symbol
SCN9A
Gene Name
sodium voltage-gated channel alpha subunit 9
Gene Aliases
ETHA, FEB3B, GEFSP7, HSAN2D, NE-NA, NENA, Nav1.7, PN1, SFNP
Location
Chr.2:166195185-166375987 on build GRCh38
Assay Gene Location
Within Exon 29
Gene Symbol Transcript Accession Exon Location Assay Location Protein ID
SCN9A NM_002977.3 27 6433 NP_002968.1
XM_005246757.2 27 6439 XP_005246814.1
AJ277393.1 1 180
X82835.1 26 6140 CAA58042.1

Target Copy Number Variation Details

DGV Version
Release date: 2016-05-15, GRCh GRCh38
Target
Variation
Location CNV
Subtype
Genes
nsv583585 Chr2:166170659 - 166216180 on Build GRCh38 Loss SCN9A LOC101929680
nsv961905 Chr2:166198416 - 166199823 on Build GRCh38 Duplication SCN9A LOC101929680

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