Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
GDNF
Entrez Gene ID
2668
Gene Name
glial cell derived neurotrophic factor
Gene Aliases
ATF1, ATF2, HFB1-GDNF, HSCR3
Chromosome Location
Chr.5: 37812677 - 37840044 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_000514.3 NP_000505.1 3 - 3 3651 89
NM_001190468.1 NP_001177397.1 3 - 3 3671 89
NM_001190469.1 NP_001177398.1 3 - 3 3593 89
NM_001278098.1 NP_001265027.1 3 - 3 3479 89
NM_199231.2 NP_954701.1 3 - 3 3496 89
GenBank mRNA BC008580.1 - 1 - 1 1257 87


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA AI005480.1 - 1 Chr. 5 - 37812715 - 37812941 [+] on Build GRCh38 89
GenBankmRNA AA194805.1 - 1 Chr. 5 - 37812677 - 37813171 [+] on Build GRCh38 87
GenBankmRNA DB297648.1 - 1 Chr. 5 - 37812670 - 37813199 [+] on Build GRCh38 89
GenBankmRNA BX116877.1 - 1 438 Chr. 5 - 37812679 - 37813273 [-] on Build GRCh38 87
GenBankmRNA AI768191.1 - 1 Chr. 5 - 37812679 - 37813190 [+] on Build GRCh38 87
GenBankmRNA AW296078.1 - 1 Chr. 5 - 37812677 - 37813190 [+] on Build GRCh38 87
GenBankmRNA AA253179.1 - 1 Chr. 5 - 37812708 - 37812907 [+] on Build GRCh38 87
GenBankmRNA AI087343.1 - 1 Chr. 5 - 37812678 - 37813091 [+] on Build GRCh38 87
GenBankmRNA AI039134.1 - 1 Chr. 5 - 37812678 - 37813077 [+] on Build GRCh38 89
GenBankmRNA AI218255.1 - 1 Chr. 5 - 37812715 - 37812941 [+] on Build GRCh38 89


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream WD repeat domain 70 WDR70 -60.0kb Anti-sense Chr. - 37379280 - 37752672 on Build GRCh38
Downstream GDNF antisense RNA 1 (head to head) GDNF-AS1 GDNFOS 24.3kb Anti-sense Chr. - 37840028 - 37875799 on Build GRCh38

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