Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
SNHG1
Entrez Gene ID
23642
Gene Name
small nucleolar RNA host gene 1
Gene Aliases
LINC00057, NCRNA00057, U22HG, UHG
Chromosome Location
Chr.11: 62851988 - 62855888 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_003098.1 4 - 5 195 117


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA BE539085.1 - 3 - 4 318 Chr. 11 - 62852590 - 62855611 [-] on Build GRCh38 117
GenBankmRNA CN386538.1 - 2 - 3 120 Chr. 11 - 62852434 - 62855208 [-] on Build GRCh38 117
GenBankmRNA BM746222.1 - 4 - 5 192 Chr. 11 - 62852614 - 62855885 [-] on Build GRCh38 117
GenBankmRNA CN386567.1 - 3 - 4 178 Chr. 11 - 62854036 - 62855466 [-] on Build GRCh38 117
GenBankmRNA DA849223.1 - 4 - 5 192 Chr. 11 - 62853354 - 62855885 [-] on Build GRCh38 117
GenBankmRNA CN386542.1 - 3 - 4 175 Chr. 11 - 62852467 - 62855467 [-] on Build GRCh38 117
GenBankmRNA BQ719301.1 - 3 - 4 158 Chr. 11 - 62852207 - 62855453 [-] on Build GRCh38 117
GenBankmRNA BI253434.1 - 3 - 4 172 Chr. 11 - 62852193 - 62855467 [-] on Build GRCh38 117
GenBankmRNA HY165340.1 - 3 - 4 191 Chr. 11 - 62853376 - 62855467 [-] on Build GRCh38 117
GenBankmRNA BX397597.2 - 7 - 8 Chr. 11 - 62852022 - 62855463 [+] on Build GRCh38 117
GenBankmRNA BM710724.1 - 3 - 4 173 Chr. 11 - 62852533 - 62855467 [-] on Build GRCh38 117
GenBankmRNA CN386546.1 - 3 - 4 159 Chr. 11 - 62853567 - 62855454 [-] on Build GRCh38 117
GenBankmRNA BG036368.1 - 436 Chr. - - [-] on Build 117
GenBankmRNA BM762980.1 - 4 - 5 189 Chr. 11 - 62852491 - 62855882 [-] on Build GRCh38 117
GenBankmRNA BX419062.2 - 3 - 4 173 Chr. 11 - 62852413 - 62855464 [-] on Build GRCh38 117
GenBankmRNA BF308905.1 - 2 - 3 155 Chr. 11 - 62853094 - 62855216 [-] on Build GRCh38 117
GenBankmRNA BQ690328.1 - 3 - 4 171 Chr. 11 - 62852211 - 62855466 [-] on Build GRCh38 117
GenBankmRNA CB150698.1 - 4 - 5 473 Chr. 11 - 62853805 - 62855885 [-] on Build GRCh38 117
GenBankmRNA CN386550.1 - 3 - 4 143 Chr. 11 - 62852577 - 62855438 [-] on Build GRCh38 117
GenBankmRNA DR423262.1 - 2 - 3 128 Chr. 11 - 62852424 - 62855216 [-] on Build GRCh38 117
GenBankmRNA AW963561.1 - 3 - 4 173 Chr. 11 - 62852467 - 62855467 [-] on Build GRCh38 117
GenBankmRNA BM760031.1 - 4 - 5 192 Chr. 11 - 62852320 - 62855885 [-] on Build GRCh38 117
GenBankmRNA BE279521.1 - 2 - 3 267 Chr. 11 - 62853551 - 62855305 [-] on Build GRCh38 117
GenBankmRNA BE250286.1 - 3 - 4 436 Chr. 11 - 62853551 - 62855731 [-] on Build GRCh38 117
GenBankmRNA BI768134.1 - 3 - 4 165 Chr. 11 - 62852465 - 62855460 [-] on Build GRCh38 117
GenBankmRNA DA727570.1 - 4 - 5 192 Chr. 11 - 62852469 - 62855885 [-] on Build GRCh38 117
GenBankmRNA BI255462.1 - 3 - 4 174 Chr. 11 - 62852217 - 62855467 [-] on Build GRCh38 117
GenBankmRNA BM747384.1 - 4 - 5 190 Chr. 11 - 62852532 - 62855883 [-] on Build GRCh38 117
GenBankmRNA CN386551.1 - 3 - 4 179 Chr. 11 - 62852460 - 62855474 [-] on Build GRCh38 117
GenBankmRNA AA464349.1 - 3 - 4 169 Chr. 11 - 62852571 - 62855460 [-] on Build GRCh38 117
GenBankmRNA BI334001.1 - 3 - 4 162 Chr. 11 - 62852208 - 62855457 [-] on Build GRCh38 117
GenBankmRNA BM710632.1 - 2 - 3 111 Chr. 11 - 62853098 - 62855199 [-] on Build GRCh38 117
GenBankmRNA CN386555.1 - 3 - 4 175 Chr. 11 - 62852588 - 62855466 [-] on Build GRCh38 117
GenBankmRNA BX337289.2 - 3 - 4 172 Chr. 11 - 62851994 - 62855467 [-] on Build GRCh38 117
GenBankmRNA BM762312.1 - 4 - 5 192 Chr. 11 - 62853073 - 62855885 [-] on Build GRCh38 117
GenBankmRNA CN337004.1 - 2 - 3 257 Chr. 11 - 62852607 - 62855345 [-] on Build GRCh38 117
GenBankmRNA BG826947.1 - 3 - 4 145 Chr. 11 - 62853094 - 62855439 [-] on Build GRCh38 117
GenBankmRNA BM741778.1 - 4 - 5 192 Chr. 11 - 62852450 - 62855885 [-] on Build GRCh38 117
GenBankmRNA BE794987.1 - 2 - 3 145 Chr. 11 - 62853551 - 62855216 [-] on Build GRCh38 117
GenBankmRNA BM548627.1 - 186 Chr. - - [-] on Build 117
GenBankmRNA CN386559.1 - 3 - 4 181 Chr. 11 - 62852641 - 62855460 [-] on Build GRCh38 117
GenBankmRNA BI755677.1 - 3 - 4 554 Chr. 11 - 62853073 - 62855849 [-] on Build GRCh38 117
GenBankmRNA AA373864.1 - 3 - 4 165 Chr. 11 - 62854008 - 62855460 [-] on Build GRCh38 117
GenBankmRNA BM765988.1 - 4 - 5 192 Chr. 11 - 62852538 - 62855885 [-] on Build GRCh38 117
GenBankmRNA CN386563.1 - 3 - 4 165 Chr. 11 - 62853804 - 62855460 [-] on Build GRCh38 117
GenBankmRNA CN337012.1 - 3 - 4 152 Chr. 11 - 62852233 - 62855447 [-] on Build GRCh38 117
GenBankmRNA CN386537.1 - 3 - 4 165 Chr. 11 - 62852346 - 62855460 [-] on Build GRCh38 117
GenBankmRNA BI772659.1 - 3 - 4 157 Chr. 11 - 62852204 - 62855451 [-] on Build GRCh38 117
GenBankmRNA BE734043.1 - 2 - 3 251 Chr. 11 - 62853556 - 62855283 [-] on Build GRCh38 117
GenBankmRNA BI258011.1 - 3 - 4 319 Chr. 11 - 62852622 - 62855615 [-] on Build GRCh38 117
GenBankmRNA AL561474.3 - 3 - 4 162 Chr. 11 - 62852103 - 62855457 [-] on Build GRCh38 117
GenBankmRNA BM841851.1 - 4 - 5 192 Chr. 11 - 62852325 - 62855885 [-] on Build GRCh38 117
GenBankmRNA BM772121.1 - 4 - 5 192 Chr. 11 - 62852500 - 62855885 [-] on Build GRCh38 117
GenBankmRNA BI835258.1 - 3 - 4 174 Chr. 11 - 62853179 - 62855466 [-] on Build GRCh38 117
GenBankmRNA CN337018.1 - 3 - 4 332 Chr. 11 - 62852291 - 62855621 [-] on Build GRCh38 117
GenBankmRNA AW954429.1 - 3 - 4 160 Chr. 11 - 62852468 - 62855455 [-] on Build GRCh38 117
GenBankmRNA DA079221.1 - 4 - 5 192 Chr. 11 - 62853506 - 62855885 [-] on Build GRCh38 117
GenBankmRNA CN386545.1 - 3 - 4 171 Chr. 11 - 62852621 - 62855460 [-] on Build GRCh38 117
GenBankmRNA BM756504.1 - 4 - 5 190 Chr. 11 - 62853073 - 62855883 [-] on Build GRCh38 117
GenBankmRNA BQ934825.1 - 3 - 4 175 Chr. 11 - 62852148 - 62855467 [-] on Build GRCh38 117
GenBankmRNA BF149374.1 - 2 - 3 Chr. 11 - 62854016 - 62855460 [+] on Build GRCh38 117
GenBankmRNA CX783853.1 - 3 - 4 442 Chr. 11 - 62852595 - 62855737 [-] on Build GRCh38 117
GenBankmRNA BM772480.1 - 4 - 5 192 Chr. 11 - 62852439 - 62855885 [-] on Build GRCh38 117
GenBankmRNA CN386549.1 - 3 - 4 568 Chr. 11 - 62854042 - 62855860 [-] on Build GRCh38 117
GenBankmRNA DA363685.1 - 4 - 5 225 Chr. 11 - 62853371 - 62855885 [-] on Build GRCh38 117
GenBankmRNA R57509.1 - 110 Chr. - - [-] on Build 117
GenBankmRNA BM772875.1 - 4 - 5 192 Chr. 11 - 62852441 - 62855885 [-] on Build GRCh38 117
GenBankmRNA BM752016.1 - 4 - 5 191 Chr. 11 - 62852665 - 62855883 [-] on Build GRCh38 117
GenBankmRNA BG828516.1 - 3 - 4 152 Chr. 11 - 62853094 - 62855446 [-] on Build GRCh38 117
GenBankmRNA BQ954365.1 - 3 - 4 174 Chr. 11 - 62852813 - 62855467 [-] on Build GRCh38 117
GenBankmRNA CN337005.1 - 2 - 3 268 Chr. 11 - 62852593 - 62855353 [-] on Build GRCh38 117
GenBankmRNA DA374845.1 - 4 - 5 192 Chr. 11 - 62853525 - 62855885 [-] on Build GRCh38 117
GenBankmRNA BF205426.1 - 3 - 4 161 Chr. 11 - 62853094 - 62855451 [-] on Build GRCh38 117
GenBankmRNA CN386562.1 - 3 - 4 172 Chr. 11 - 62853803 - 62855467 [-] on Build GRCh38 117
GenBankmRNA BM751992.1 - 4 - 5 190 Chr. 11 - 62852613 - 62855883 [-] on Build GRCh38 117
GenBankmRNA BI085491.1 - 3 - 4 176 Chr. 11 - 62853094 - 62855467 [-] on Build GRCh38 117
GenBankmRNA BM979103.1 - 3 - 4 592 Chr. 11 - 62853575 - 62855887 [-] on Build GRCh38 117
GenBankmRNA AV728106.1 - 3 - 4 165 Chr. 11 - 62852319 - 62855460 [-] on Build GRCh38 117
GenBankmRNA BG527213.1 - 4 - 5 193 Chr. 11 - 62852292 - 62855885 [-] on Build GRCh38 117
GenBankmRNA BM771760.1 - 3 - 4 185 Chr. 11 - 62852449 - 62855467 [-] on Build GRCh38 117
GenBankmRNA CN337013.1 - 2 - 3 86 Chr. 11 - 62853573 - 62855174 [-] on Build GRCh38 117
GenBankmRNA AL559848.3 - 3 - 4 165 Chr. 11 - 62852053 - 62855460 [-] on Build GRCh38 117
GenBankmRNA BM823449.1 - 3 - 4 163 Chr. 11 - 62852446 - 62855458 [-] on Build GRCh38 117
GenBankmRNA BI754745.1 - 3 - 4 560 Chr. 11 - 62853090 - 62855858 [-] on Build GRCh38 117
GenBankmRNA BM848355.1 - 4 - 5 192 Chr. 11 - 62852550 - 62855885 [-] on Build GRCh38 117
GenBankmRNA CB125560.1 - 4 - 5 192 Chr. 11 - 62852832 - 62855885 [-] on Build GRCh38 117
GenBankmRNA CN386536.1 - 3 - 4 175 Chr. 11 - 62852433 - 62855467 [-] on Build GRCh38 117
GenBankmRNA BM842784.1 - 4 - 5 192 Chr. 11 - 62852297 - 62855885 [-] on Build GRCh38 117
GenBankmRNA DA972474.1 - 4 - 5 192 Chr. 11 - 62853371 - 62855885 [-] on Build GRCh38 117
GenBankmRNA CN337019.1 - 3 - 4 155 Chr. 11 - 62853035 - 62855450 [-] on Build GRCh38 117
GenBankmRNA AA218776.1 - 3 - 4 154 Chr. 11 - 62853076 - 62855449 [-] on Build GRCh38 117
GenBankmRNA DA728354.1 - 4 - 5 190 Chr. 11 - 62852592 - 62855883 [-] on Build GRCh38 117
GenBankmRNA AA377743.1 - 171 Chr. - - [-] on Build 117
GenBankmRNA BG623014.1 - 4 - 5 193 Chr. 11 - 62852274 - 62855885 [-] on Build GRCh38 117
GenBankmRNA BM847417.1 - 4 - 5 192 Chr. 11 - 62852950 - 62855885 [-] on Build GRCh38 117
GenBankmRNA BM740049.1 - 3 - 4 187 Chr. 11 - 62852514 - 62855467 [-] on Build GRCh38 117
GenBankmRNA BM770809.1 - 4 - 5 192 Chr. 11 - 62852636 - 62855885 [-] on Build GRCh38 117
GenBankmRNA CN386544.1 - 3 - 4 156 Chr. 11 - 62852426 - 62855451 [-] on Build GRCh38 117
GenBankmRNA BM772174.1 - 4 - 5 192 Chr. 11 - 62852491 - 62855885 [-] on Build GRCh38 117
GenBankmRNA AV656829.1 - 3 - 4 144 Chr. 11 - 62852817 - 62855439 [-] on Build GRCh38 117
GenBankmRNA HY048030.1 - 4 - 5 254 Chr. 11 - 62852631 - 62855947 [-] on Build GRCh38 117
GenBankmRNA AA082320.1 - 3 - 4 163 Chr. 11 - 62852394 - 62855458 [-] on Build GRCh38 117
GenBankmRNA BI260697.1 - 3 - 4 182 Chr. 11 - 62852486 - 62855464 [-] on Build GRCh38 117
GenBankmRNA AA310310.1 - 3 - 4 165 Chr. 11 - 62852808 - 62855460 [-] on Build GRCh38 117
GenBankmRNA BM771178.1 - 4 - 5 190 Chr. 11 - 62852441 - 62855883 [-] on Build GRCh38 117
GenBankmRNA BG723036.1 - 4 - 5 475 Chr. 11 - 62853560 - 62855885 [-] on Build GRCh38 117
GenBankmRNA BM846098.1 - 4 - 5 189 Chr. 11 - 62852669 - 62855882 [-] on Build GRCh38 117
GenBankmRNA BM753954.1 - 4 - 5 193 Chr. 11 - 62852631 - 62855885 [-] on Build GRCh38 117
GenBankmRNA BX091505.1 - 3 - 4 165 Chr. 11 - 62852395 - 62855460 [-] on Build GRCh38 117
GenBankmRNA BF307997.1 - 2 - 3 149 Chr. 11 - 62853094 - 62855216 [-] on Build GRCh38 117
GenBankmRNA CF456049.1 - 3 - 4 198 Chr. 11 - 62852298 - 62855460 [-] on Build GRCh38 117
GenBankmRNA CN386561.1 - 4 - 5 193 Chr. 11 - 62853547 - 62855881 [-] on Build GRCh38 117
GenBankmRNA BP428502.1 - 2 - 3 128 Chr. 11 - 62853098 - 62855214 [-] on Build GRCh38 117
GenBankmRNA CN337014.1 - 327 Chr. - - [-] on Build 117
GenBankmRNA AL514896.3 - 3 - 4 149 Chr. 11 - 62852158 - 62855444 [-] on Build GRCh38 117
GenBankmRNA HY171921.1 - 4 - 5 191 Chr. 11 - 62853430 - 62855884 [-] on Build GRCh38 117
GenBankmRNA BG681844.1 - 3 - 4 166 Chr. 11 - 62852264 - 62855451 [-] on Build GRCh38 117
GenBankmRNA BU553089.1 - 3 - 4 197 Chr. 11 - 62852439 - 62855467 [-] on Build GRCh38 117
GenBankmRNA CN386565.1 - 3 - 4 155 Chr. 11 - 62852818 - 62855450 [-] on Build GRCh38 117
GenBankmRNA CN337010.1 - 2 - 3 145 Chr. 11 - 62853203 - 62855224 [-] on Build GRCh38 117
GenBankmRNA CX760106.1 - 3 - 4 571 Chr. 11 - 62853804 - 62855866 [-] on Build GRCh38 117
GenBankmRNA AW958661.1 - 3 - 4 183 Chr. 11 - 62853809 - 62855478 [-] on Build GRCh38 117
GenBankmRNA H84684.1 - 3 - 4 178 Chr. 11 - 62853547 - 62855467 [-] on Build GRCh38 117
GenBankmRNA AL555120.3 - 3 - 4 171 Chr. 11 - 62852324 - 62855466 [-] on Build GRCh38 117
GenBankmRNA AA305276.1 - 3 - 4 165 Chr. 11 - 62853094 - 62855460 [-] on Build GRCh38 117
GenBankmRNA HY109978.1 - 4 - 5 189 Chr. 11 - 62852554 - 62855882 [-] on Build GRCh38 117
GenBankmRNA DA609299.1 - 4 - 5 192 Chr. 11 - 62853371 - 62855885 [-] on Build GRCh38 117
GenBankmRNA BQ637146.1 - 3 - 4 175 Chr. 11 - 62852445 - 62855467 [-] on Build GRCh38 117
GenBankmRNA BG823022.1 - 3 - 4 558 Chr. 11 - 62854028 - 62855857 [-] on Build GRCh38 117
GenBankmRNA CN386568.1 - 3 - 4 182 Chr. 11 - 62852447 - 62855466 [-] on Build GRCh38 117
GenBankmRNA AV654083.1 - 3 - 4 174 Chr. 11 - 62852817 - 62855467 [-] on Build GRCh38 117
GenBankmRNA C05029.1 - 1 170 Chr. 20 - 29810020 - 29810503 [+] on Build GRCh38 117
GenBankmRNA BM753151.1 - 4 - 5 192 Chr. 11 - 62852628 - 62855885 [-] on Build GRCh38 118
GenBankmRNA BM765264.1 - 4 - 5 192 Chr. 11 - 62852483 - 62855885 [-] on Build GRCh38 117
GenBankmRNA BE794379.1 - 3 - 4 146 Chr. 11 - 62853551 - 62855441 [-] on Build GRCh38 117
GenBankmRNA BY996166.1 - 3 - 4 183 Chr. 11 - 62852414 - 62855467 [-] on Build GRCh38 117
GenBankmRNA BU196426.1 - 188 Chr. - - [-] on Build 117
GenBankmRNA CN386539.1 - 3 - 4 166 Chr. 11 - 62852439 - 62855457 [-] on Build GRCh38 117
GenBankmRNA BX341807.2 - 3 - 4 172 Chr. 11 - 62852048 - 62855467 [-] on Build GRCh38 117
GenBankmRNA CN386543.1 - 3 - 4 165 Chr. 11 - 62852444 - 62855460 [-] on Build GRCh38 117
GenBankmRNA BE278295.1 - 2 - 3 209 Chr. 11 - 62853551 - 62855299 [-] on Build GRCh38 117
GenBankmRNA BF205416.1 - 2 - 3 141 Chr. 11 - 62853094 - 62855216 [-] on Build GRCh38 117
GenBankmRNA CB268843.1 - 2 - 3 77 Chr. 11 - 62852419 - 62855165 [-] on Build GRCh38 117
GenBankmRNA CK826165.1 - 3 - 4 309 Chr. 11 - 62852643 - 62855599 [-] on Build GRCh38 117
GenBankmRNA CN386547.1 - 3 - 4 170 Chr. 11 - 62852444 - 62855460 [-] on Build GRCh38 117
GenBankmRNA BI255546.1 - 3 - 4 177 Chr. 11 - 62852267 - 62855462 [-] on Build GRCh38 117
GenBankmRNA CN337007.1 - 3 - 4 165 Chr. 11 - 62852749 - 62855460 [-] on Build GRCh38 117
GenBankmRNA BQ477769.1 - 3 - 4 309 Chr. 11 - 62852646 - 62855599 [-] on Build GRCh38 117
GenBankmRNA CN386552.1 - 3 - 4 165 Chr. 11 - 62852374 - 62855460 [-] on Build GRCh38 117
GenBankmRNA BE545829.1 - 3 - 4 155 Chr. 11 - 62852235 - 62855450 [-] on Build GRCh38 117
GenBankmRNA BU168780.1 - 3 - 4 188 Chr. 11 - 62852268 - 62855483 [-] on Build GRCh38 117
GenBankmRNA BM766186.1 - 4 - 5 192 Chr. 11 - 62852453 - 62855885 [-] on Build GRCh38 117
GenBankmRNA BI911700.1 - 176 Chr. - - [-] on Build 117
GenBankmRNA CN386556.1 - 3 - 4 165 Chr. 11 - 62852481 - 62855460 [-] on Build GRCh38 117
GenBankmRNA AA312093.1 - 3 - 4 154 Chr. 11 - 62853911 - 62855449 [-] on Build GRCh38 117
GenBankmRNA AA115603.1 - 3 - 4 169 Chr. 11 - 62853289 - 62855463 [-] on Build GRCh38 117
GenBankmRNA L36587.3 - 3 - 4 435 Chr. 11 - 62851989 - 62855730 [-] on Build GRCh38 117
GenBankmRNA DA380033.1 - 4 - 5 189 Chr. 11 - 62852545 - 62855882 [-] on Build GRCh38 117
GenBankmRNA BM841594.1 - 4 - 5 192 Chr. 11 - 62852299 - 62855885 [-] on Build GRCh38 117
GenBankmRNA BE873032.1 - 421 Chr. - - [-] on Build 117
GenBankmRNA AA380722.1 - 3 - 4 173 Chr. 11 - 62853556 - 62855467 [-] on Build GRCh38 117
GenBankmRNA AA401593.1 - 3 - 4 150 Chr. 11 - 62852604 - 62855445 [-] on Build GRCh38 117
GenBankmRNA BI768992.1 - 3 - 4 166 Chr. 11 - 62852281 - 62855460 [-] on Build GRCh38 117
GenBankmRNA BE792700.1 - 3 - 4 149 Chr. 11 - 62853551 - 62855444 [-] on Build GRCh38 117
GenBankmRNA BM843108.1 - 4 - 5 192 Chr. 11 - 62852291 - 62855885 [-] on Build GRCh38 117
GenBankmRNA CR992196.1 - 3 - 4 179 Chr. 11 - 62852199 - 62855467 [-] on Build GRCh38 117
GenBankmRNA CN386564.1 - 3 - 4 177 Chr. 11 - 62852567 - 62855460 [-] on Build GRCh38 117
GenBankmRNA BM765544.1 - 4 - 5 192 Chr. 11 - 62852615 - 62855885 [-] on Build GRCh38 117
GenBankmRNA HY069205.1 - 4 - 5 189 Chr. 11 - 62853407 - 62855882 [-] on Build GRCh38 117
GenBankmRNA BE250260.1 - 3 - 4 436 Chr. 11 - 62852593 - 62855731 [-] on Build GRCh38 117
GenBankmRNA AW958656.1 - 183 Chr. - - [-] on Build 117


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream small nucleolar RNA, C/D box 28 SNORD28 RNU28, SNORD28A, U28 Sense Chr. - 62854621 - 62854695 on Build GRCh38
Downstream FSHD region gene 1 family member B, pseudogene FRG1BP C20orf80, FRG1B, bA348I14.2 566.7kb Sense Chr. - 30377203 - 30399331 on Build GRCh38

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