Assay Design
The assay primers and probes lie within a single exon. This assay will detect gDNA.
Gene Transcripts
- Gene Symbol
- KCNQ1OT1
- Entrez Gene ID
-
10984
- Gene Name
- KCNQ1 opposite strand/antisense transcript 1 (non-protein coding)
- Gene Aliases
-
KCNQ1-AS2, KCNQ10T1, Kncq1, KvDMR1, KvLQT1-AS, LIT1, NCRNA00012
- Chromosome Location
-
Chr.11: 2608328 - 2699998 on Build GRCh38
| Interrogated Sequence |
Translated Protein |
Exon Boundary |
Assay Location |
Amplicon Length |
| RefSeq |
NR_002728.3 |
|
1 - 1 |
|
127 |
Non Gene Transcripts
| Interrogated Sequence |
Translated Protein |
Exon Boundary |
Assay Location |
IMAGE Clone ID |
Transcript Location |
Amplicon Length |
| GenBankmRNA |
AJ006345.3 |
- |
2 |
|
|
Chr. 11 - 2444100 - 2849207 [+] on Build GRCh38 |
127 |
| GenBankmRNA |
BG506736.1 |
- |
1 |
|
|
Chr. 11 - 2678332 - 2679124 [-] on Build GRCh38 |
127 |
| GenBankmRNA |
BQ322027.1 |
- |
1 |
|
|
Chr. 11 - 2678465 - 2679018 [+] on Build GRCh38 |
127 |
| GenBankmRNA |
AA693940.1 |
- |
1 |
349 |
|
Chr. 11 - 2678328 - 2678790 [+] on Build GRCh38 |
126 |
| GenBankmRNA |
AI023707.1 |
- |
1 |
|
|
Chr. 11 - 2678327 - 2678764 [+] on Build GRCh38 |
127 |
| GenBankmRNA |
BG957111.1 |
- |
1 |
|
|
Chr. 11 - 2678465 - 2679020 [+] on Build GRCh38 |
127 |
Adjacent Gene Details
|
Gene Name |
Gene Symbol |
Alias |
Distance |
Relative Direction |
Location Chromosome |
| Upstream |
transient receptor potential cation channel subfamily M member 5 |
TRPM5 |
LTRPC5, MTR1 |
-243.3kb
|
Anti-sense |
Chr. - 2403962 - 2423424 on Build GRCh38 |
| Downstream |
KCNQ1 antisense RNA 1 |
KCNQ1-AS1 |
|
161.3kb
|
Anti-sense |
Chr. - 2840135 - 2861569 on Build GRCh38 |
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