Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
KCNQ1OT1
Entrez Gene ID
10984
Gene Name
KCNQ1 opposite strand/antisense transcript 1 (non-protein coding)
Gene Aliases
KCNQ1-AS2, KCNQ10T1, Kncq1, KvDMR1, KvLQT1-AS, LIT1, NCRNA00012
Chromosome Location
Chr.11: 2608328 - 2699998 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_002728.3 1 - 1 127


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA AJ006345.3 - 2 Chr. 11 - 2444100 - 2849207 [+] on Build GRCh38 127
GenBankmRNA BG506736.1 - 1 Chr. 11 - 2678332 - 2679124 [-] on Build GRCh38 127
GenBankmRNA BQ322027.1 - 1 Chr. 11 - 2678465 - 2679018 [+] on Build GRCh38 127
GenBankmRNA AA693940.1 - 1 349 Chr. 11 - 2678328 - 2678790 [+] on Build GRCh38 126
GenBankmRNA AI023707.1 - 1 Chr. 11 - 2678327 - 2678764 [+] on Build GRCh38 127
GenBankmRNA BG957111.1 - 1 Chr. 11 - 2678465 - 2679020 [+] on Build GRCh38 127


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream transient receptor potential cation channel subfamily M member 5 TRPM5 LTRPC5, MTR1 -243.3kb Anti-sense Chr. - 2403962 - 2423424 on Build GRCh38
Downstream KCNQ1 antisense RNA 1 KCNQ1-AS1 161.3kb Anti-sense Chr. - 2840135 - 2861569 on Build GRCh38

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