Product Details

SNP ID

rs148642400

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.20:51391399 on Build GRCh38

Set Membership

Context Sequence [VIC/FAM]

TGTCTTGCTATAATGGCTTCTTTTA[C/T]GTCTGATTTCTGGCAGGAGGTCCTG

Phenotype

MIM: 600490

Polymorphism

C/T, Transition Substitution

Allele Nomenclature

Literature Links

NFATC2 PubMed Links

Additional Information

For this assay, SNP(s) [rs111603709] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

NFATC2

Gene Name

nuclear factor of activated T-cells 2

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001136021.2	2296	UTR 3			NP_001129493.1
NM_001258292.1	2296	Silent Mutation	ACA,ACG	T905T	NP_001245221.1
NM_001258294.1	2296	UTR 3			NP_001245223.1
NM_001258295.1	2296	Silent Mutation	ACA,ACG	T706T	NP_001245224.1
NM_001258296.1	2296	UTR 3			NP_001245225.1
NM_001258297.1	2296	Silent Mutation	ACA,ACG	T706T	NP_001245226.1
NM_012340.4	2296	UTR 3			NP_036472.2
NM_173091.3	2296	Silent Mutation	ACA,ACG	T925T	NP_775114.1
XM_011528824.2	2296	Intron			XP_011527126.1
XM_011528825.2	2296	Intron			XP_011527127.1
XM_011528826.2	2296	Intron			XP_011527128.1
XM_017027850.1	2296	Intron			XP_016883339.1
XM_017027851.1	2296	Silent Mutation	ACA,ACG	T695T	XP_016883340.1

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