Product Details

SNP ID

rs141906115

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.4:56650729 on Build GRCh38

Set Membership

Context Sequence [VIC/FAM]

GAGAAAAGTAATCGAAAGCCAAGCA[C/T]GGCAGACTATCATGGGGGTAGCCTT

Phenotype

MIM: 607275

Polymorphism

C/T, Transition Substitution

Allele Nomenclature

Literature Links

HOPX PubMed Links

Additional Information

For this assay, SNP(s) [rs4371677] are located under a probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

HOPX

Gene Name

HOP homeobox

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001145459.1	812	Intron			NP_001138931.1
NM_001145460.1	812	Silent Mutation	CCA,CCG	P94P	NP_001138932.1
NM_032495.5	812	Intron			NP_115884.4
NM_139211.4	812	Intron			NP_631957.1
NM_139212.3	812	Intron			NP_631958.1
XM_006714052.2	812	Silent Mutation	CCA,CCG	P94P	XP_006714115.1
XM_017008728.1	812	Intron			XP_016864217.1
XM_017008729.1	812	Intron			XP_016864218.1
XM_017008730.1	812	Intron			XP_016864219.1
XM_017008731.1	812	Intron			XP_016864220.1
XM_017008732.1	812	Intron			XP_016864221.1
XM_017008733.1	812	Intron			XP_016864222.1
XM_017008734.1	812	Intron			XP_016864223.1

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