Product Details

SNP ID

rs138619288

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.5:150896309 on Build GRCh38

Set Membership

Context Sequence [VIC/FAM]

GAGTTCTCTGATGTACAACAAGATG[A/G]AACTTCTCACTGAAGGCTTTTCCGC

Phenotype

MIM: 608212 MIM: 612429

Polymorphism

A/G, Transition Substitution

Allele Nomenclature

Literature Links

IRGM PubMed Links

Additional Information

For this assay, SNP(s) [rs17800771] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

IRGM

Gene Name

immunity related GTPase M

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001145805.1	1351	Intron			NP_001139277.1
XM_011537641.2	1351	Intron			XP_011535943.1

Gene

ZNF300

Gene Name

zinc finger protein 300

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001172831.1	1351	Silent Mutation	TTC,TTT	F326F	NP_001166302.1
NM_001172832.1	1351	Silent Mutation	TTC,TTT	F274F	NP_001166303.1
NM_052860.2	1351	Silent Mutation	TTC,TTT	F310F	NP_443092.1
XM_011537702.2	1351	Silent Mutation	TTC,TTT	F315F	XP_011536004.1

View Full Product Details