Product Details

SNP ID
rs188379657
Assay Type
Functionally Tested
NCBI dbSNP Submissions
NA
Location
Chr.2:27212401 on Build GRCh38
Set Membership
Context Sequence [VIC/FAM]
CTCACGACCCGGGTAGTCTTACGAC[C/T]CTGGTGCCCTGGGCTGCCGCCCTGC
Phenotype
MIM: 114010 MIM: 604024
Polymorphism
C/T, Transition Substitution
Allele Nomenclature
Literature Links
ATRAID PubMed Links
Additional Information
For this assay, SNP(s) [rs1275533] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene
ATRAID
Gene Name
all-trans retinoic acid induced differentiation factor
Transcript Accession SNP Location SNP Type Codon Change Amino Acid Change Protein ID
NM_001170795.1 371 Silent Mutation ACC,ACT T11T NP_001164266.1
NM_016085.4 371 UTR 5 NP_057169.2
NM_080592.3 371 Silent Mutation ACC,ACT T66T NP_542159.3
Gene
CAD
Gene Name
carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
There are no transcripts associated with this gene.

Gene
SLC5A6
Gene Name
solute carrier family 5 member 6
Transcript Accession SNP Location SNP Type Codon Change Amino Acid Change Protein ID
NM_021095.2 371 Intron NP_066918.2
XM_006712128.1 371 Intron XP_006712191.1
XM_006712129.1 371 Intron XP_006712192.1
XM_006712130.1 371 Intron XP_006712193.1
XM_011533146.2 371 Intron XP_011531448.1
XM_017005216.1 371 Intron XP_016860705.1

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