Product Details

SNP ID

rs12442000

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.15:60497181 on Build GRCh38

Set Membership

HapMap

Context Sequence [VIC/FAM]

AATCCTCCGACTTTAGTACCCTCCT[C/T]CTGTTGTAAACAGAGGTCAATGATC

Phenotype

MIM: 600825

Polymorphism

C/T, Transition Substitution

Allele Nomenclature

Literature Links

RORA PubMed Links

Additional Information

For this assay, SNP(s) [rs141145671,rs79921373] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

RORA

Gene Name

RAR related orphan receptor A

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_002943.3	1843	UTR 3			NP_002934.1
NM_134260.2	1843	UTR 3			NP_599022.1
NM_134261.2	1843	UTR 3			NP_599023.1
NM_134262.2	1843	UTR 3			NP_599024.1
XM_005254584.4	1843	UTR 3			XP_005254641.1
XM_011521874.1	1843	UTR 3			XP_011520176.1
XM_011521875.1	1843	UTR 3			XP_011520177.1
XM_011521877.2	1843	UTR 3			XP_011520179.1
XM_011521878.1	1843	UTR 3			XP_011520180.1
XM_011521879.2	1843	UTR 3			XP_011520181.1
XM_017022466.1	1843	UTR 3			XP_016877955.1
XM_017022467.1	1843	UTR 3			XP_016877956.1

Gene

RORA-AS1

Gene Name

RORA antisense RNA 1

There are no transcripts associated with this gene.

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