Product Details

SNP ID

rs28521273

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.10:124008006 on Build GRCh38

Set Membership

Context Sequence [VIC/FAM]

CTGGAGAGAAAGGCCCCTGGAGGGA[A/G]AAACCATGTCTGGATGGCATTGAGT

Phenotype

MIM: 608277

Polymorphism

A/G, Transition Substitution

Allele Nomenclature

Literature Links

CHST15 PubMed Links

Additional Information

For this assay, SNP(s) [rs79057288] are located under a probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

CHST15

Gene Name

carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001270764.1	4394	UTR 3			NP_001257693.1
NM_001270765.1	4394	Intron			NP_001257694.1
NM_014863.3	4394	Intron			NP_055678.2
NM_015892.4	4394	UTR 3			NP_056976.2
XM_005269891.3	4394	UTR 3			XP_005269948.1
XM_005269892.4	4394	Intron			XP_005269949.1
XM_005269893.3	4394	Intron			XP_005269950.1
XM_005269894.4	4394	Intron			XP_005269951.1
XM_006717891.3	4394	UTR 3			XP_006717954.1
XM_011539857.1	4394	Intron			XP_011538159.1
XM_017016319.1	4394	UTR 3			XP_016871808.1
XM_017016320.1	4394	Intron			XP_016871809.1
XM_017016321.1	4394	Intron			XP_016871810.1

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