Assay Design



Gene Transcripts

Gene Symbol
MGAT5
Entrez Gene ID
4249
Gene Name
mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase
Gene Aliases
GNT-V, GNT-VA
Chromosome Location
Chr.2: 134119922 - 134454621 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_002410.4 NP_002401.1 16 - 16 8068 63
XM_005263668.4 XP_005263725.1 17 - 17 8433 63
XM_005263669.4 XP_005263726.1 17 - 17 8430 63
XM_005263670.3 XP_005263727.1 17 - 17 8086 63
XM_006712534.3 XP_006712597.1 18 - 18 8282 63
XM_011511199.2 XP_011509501.1 18 - 18 8717 63
XM_011511200.1 XP_011509502.1 17 - 17 8082 63
XM_011511201.2 XP_011509503.1 17 - 17 8186 63
XM_011511202.1 XP_011509504.1 17 - 17 8083 63
XM_017004147.1 XP_016859636.1 18 - 18 8557 63
XM_017004148.1 XP_016859637.1 17 - 17 8394 63
GenBank mRNA AF055029.1 - 1 - 1 1740 63
AK056461.1 - 1 - 1 2681 63
AK125207.1 - 1 - 1 3695 63
BX647087.1 - 1 - 1 5224 63


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA AW088353.1 - 1 Chr. 2 - 134454120 - 134454620 [-] on Build GRCh38 63
GenBankmRNA AI379211.1 - 1 Chr. 2 - 134454181 - 134454621 [-] on Build GRCh38 63
GenBankmRNA AA150977.1 - 1 Chr. 2 - 134454129 - 134454620 [-] on Build GRCh38 63
GenBankmRNA CD364602.1 - 1 Chr. 2 - 134453907 - 134454623 [-] on Build GRCh38 63
GenBankmRNA CD368208.1 - 1 Chr. 2 - 134453972 - 134454623 [-] on Build GRCh38 63
GenBankmRNA DB340932.1 - 1 Chr. 2 - 134454078 - 134454620 [-] on Build GRCh38 63
GenBankmRNA DB357352.1 - 1 Chr. 2 - 134454071 - 134454620 [-] on Build GRCh38 63
GenBankmRNA AI084072.1 - 1 Chr. 2 - 134454090 - 134454621 [-] on Build GRCh38 63
GenBankmRNA AA588223.1 - 1 Chr. 2 - 134454470 - 134454622 [-] on Build GRCh38 63
GenBankmRNA AI803848.1 - 1 Chr. 2 - 134454272 - 134454620 [-] on Build GRCh38 63
GenBankmRNA F10546.1 - Chr. - - [-] on Build 63
GenBankmRNA AA887775.1 - 1 Chr. 2 - 134454289 - 134454623 [-] on Build GRCh38 63
GenBankmRNA BQ008077.1 - 1 Chr. 2 - 134453907 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AA470395.1 - 1 Chr. 2 - 134454293 - 134454623 [-] on Build GRCh38 63
GenBankmRNA BU076937.1 - 1 Chr. 2 - 134453999 - 134454616 [-] on Build GRCh38 63
GenBankmRNA CA444239.1 - 1 Chr. 2 - 134454166 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AW054888.1 - 1 Chr. 2 - 134454092 - 134454621 [-] on Build GRCh38 63
GenBankmRNA C20735.1 - 1 101 Chr. 16 - 74344688 - 74344981 [-] on Build GRCh38 63
GenBankmRNA AW008863.1 - 1 Chr. 2 - 134454274 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AW575704.1 - 1 Chr. 2 - 134454092 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AA194243.1 - 1 Chr. 2 - 134454140 - 134454620 [-] on Build GRCh38 63
GenBankmRNA AA450096.1 - 1 Chr. 2 - 134454222 - 134454620 [-] on Build GRCh38 63
GenBankmRNA AA150499.1 - 1 Chr. 2 - 134454031 - 134454620 [-] on Build GRCh38 63
GenBankmRNA W60898.1 - Chr. - - [-] on Build 63
GenBankmRNA CF138166.1 - 1 259 Chr. 2 - 134454289 - 134454623 [+] on Build GRCh38 63
GenBankmRNA AA721306.1 - 1 Chr. 2 - 134454300 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AI377038.1 - 1 Chr. 2 - 134454153 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AW580747.1 - 1 225 Chr. 2 - 134454321 - 134454583 [+] on Build GRCh38 63
GenBankmRNA BU753924.1 - 1 Chr. 2 - 134454283 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AI654580.1 - 1 Chr. 2 - 134454230 - 134454621 [-] on Build GRCh38 63
GenBankmRNA AI857721.1 - 1 Chr. 2 - 134454115 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AA468807.1 - 1 Chr. 2 - 134454163 - 134454620 [-] on Build GRCh38 63
GenBankmRNA BQ029329.1 - 1 Chr. 2 - 134454054 - 134454623 [-] on Build GRCh38 63
GenBankmRNA BE856266.1 - 1 Chr. 2 - 134454032 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AW152356.1 - 1 Chr. 2 - 134454089 - 134454623 [-] on Build GRCh38 63
GenBankmRNA DB384037.1 - Chr. - - [-] on Build 63
GenBankmRNA H97614.1 - 1 Chr. 2 - 134454087 - 134454610 [-] on Build GRCh38 63
GenBankmRNA AI359421.1 - 1 Chr. 2 - 134454259 - 134454620 [-] on Build GRCh38 63
GenBankmRNA BF244506.1 - 180 Chr. - - [-] on Build 63
GenBankmRNA BP396846.1 - 1 309 Chr. 2 - 134454237 - 134454623 [+] on Build GRCh38 63
GenBankmRNA AI061299.1 - 1 Chr. 2 - 134454263 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AL134724.1 - 1 Chr. 2 - 134453939 - 134454612 [-] on Build GRCh38 63
GenBankmRNA AI289994.1 - 1 Chr. 2 - 134454271 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AA100013.1 - 1 152 Chr. 2 - 134454394 - 134454621 [+] on Build GRCh38 63
GenBankmRNA N49243.1 - 1 Chr. 2 - 134454343 - 134454620 [-] on Build GRCh38 63
GenBankmRNA AI129353.1 - 1 Chr. 2 - 134454176 - 134454621 [-] on Build GRCh38 63
GenBankmRNA AW079115.1 - 1 Chr. 2 - 134454276 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AA431873.1 - 1 Chr. 2 - 134454202 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AI986179.1 - 1 Chr. 2 - 134454101 - 134454620 [-] on Build GRCh38 63
GenBankmRNA AA733104.1 - 1 Chr. 2 - 134454264 - 134454623 [-] on Build GRCh38 63
GenBankmRNA BU688252.1 - 1 Chr. 2 - 134454102 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AI869544.1 - 1 Chr. 2 - 134454260 - 134454619 [-] on Build GRCh38 63
GenBankmRNA AI128809.1 - 1 Chr. 2 - 134454186 - 134454621 [-] on Build GRCh38 63
GenBankmRNA BQ773562.1 - 1 Chr. 2 - 134453976 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AU158734.1 - 1 Chr. 2 - 134454203 - 134454620 [-] on Build GRCh38 63
GenBankmRNA AW769491.1 - 1 Chr. 2 - 134454188 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AA112980.1 - 1 Chr. 2 - 134454413 - 134454612 [-] on Build GRCh38 63
GenBankmRNA AI282703.1 - 1 Chr. 2 - 134454290 - 134454623 [-] on Build GRCh38 63
GenBankmRNA T03747.1 - Chr. - - [-] on Build 63
GenBankmRNA AA554767.1 - 1 Chr. 2 - 134454218 - 134454620 [-] on Build GRCh38 63
GenBankmRNA AI222650.1 - 1 Chr. 2 - 134454275 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AA847169.1 - 1 Chr. 2 - 134454186 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AI003470.1 - 1 Chr. 2 - 134454347 - 134454623 [-] on Build GRCh38 63
GenBankmRNA N27928.1 - 1 Chr. 2 - 134454185 - 134454620 [-] on Build GRCh38 63
GenBankmRNA AI375333.1 - 1 Chr. 2 - 134454396 - 134454620 [-] on Build GRCh38 63
GenBankmRNA AA706407.1 - 1 Chr. 2 - 134454244 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AI184525.1 - 1 Chr. 2 - 134454183 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AA737617.1 - 1 Chr. 2 - 134454318 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AW007543.1 - 1 Chr. 2 - 134454101 - 134454621 [-] on Build GRCh38 63
GenBankmRNA CN480004.1 - 1 Chr. 2 - 134453936 - 134454623 [-] on Build GRCh38 63
GenBankmRNA BM687834.1 - 1 279 Chr. 2 - 134454266 - 134454623 [+] on Build GRCh38 63
GenBankmRNA AA143059.1 - 1 Chr. 2 - 134454035 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AA833823.1 - 1 Chr. 2 - 134454155 - 134454623 [-] on Build GRCh38 63
GenBankmRNA DB324723.1 - 1 Chr. 2 - 134454090 - 134454620 [-] on Build GRCh38 63
GenBankmRNA Z38698.1 - Chr. - - [-] on Build 63
GenBankmRNA AA284068.1 - 1 Chr. 2 - 134454094 - 134454621 [-] on Build GRCh38 63
GenBankmRNA H97572.1 - 1 Chr. 2 - 134454092 - 134454620 [-] on Build GRCh38 63
GenBankmRNA N67194.1 - 1 Chr. 2 - 134454324 - 134454623 [-] on Build GRCh38 63
GenBankmRNA BU628863.1 - 1 Chr. 2 - 134453971 - 134454623 [-] on Build GRCh38 63
GenBankmRNA CA417423.1 - 1 Chr. 2 - 134453992 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AI830145.1 - 1 Chr. 2 - 134454114 - 134454619 [-] on Build GRCh38 63
GenBankmRNA W72306.1 - Chr. - - [-] on Build 63
GenBankmRNA AW662717.1 - 1 Chr. 2 - 134454278 - 134454623 [-] on Build GRCh38 63
GenBankmRNA BF589867.1 - 1 Chr. 2 - 134454280 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AI829982.1 - 1 Chr. 2 - 134454159 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AI934898.1 - 1 Chr. 2 - 134454183 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AI039607.1 - 1 Chr. 2 - 134454231 - 134454623 [-] on Build GRCh38 63
GenBankmRNA AW627917.1 - 1 Chr. 2 - 134454330 - 134454621 [-] on Build GRCh38 63
GenBankmRNA AA136861.1 - 1 Chr. 2 - 134454202 - 134454623 [-] on Build GRCh38 63


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream pyruvate dehydrogenase phosphatase regulatory subunit pseudogene LOC283922 Sense Chr. - 74332406 - 74368255 on Build GRCh38
Downstream uncharacterized LOC440386 LOC440386 21.9kb Anti-sense Chr. - 74367322 - 74369826 on Build GRCh38

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