Product Details

Assay Reference Genome
Location

Chr.16:2597280 on build GRCh38
Cytoband
16p13.3
Species
Homo sapiens
Variation Type
Copy Number

Additional Information

Target Gene Details

Entrez Gene ID
5170
Gene Symbol
PDPK1
Gene Name
3-phosphoinositide dependent protein kinase 1
Gene Aliases
PDK1, PDPK2, PDPK2P, PRO0461
Location
Chr.16:2537964-2603190 on build GRCh38
Assay Gene Location
Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Location Protein ID
PDPK1 NM_001261816.1 NP_001248745.1
NM_002613.4 NP_002604.1
NM_031268.5 NP_112558.2
XM_011522521.2 XP_011520823.1
XM_011522523.2 XP_011520825.1
XM_017023271.1 13 5401 XP_016878760.1
XM_017023272.1 13 1957 XP_016878761.1
XM_017023273.1 13 1666 XP_016878762.1
XM_017023274.1 14 1804 XP_016878763.1
XM_017023275.1 10 5026 XP_016878764.1
XM_017023276.1 10 1270 XP_016878765.1
XM_017023277.1 11 1368 XP_016878766.1
AB209835.1 BAD93072.1
AF017995.1 AAC51825.1
AK131060.1
AK222581.1 BAD96301.1
BC006339.2 AAH06339.2
BC012103.1 AAH12103.1
BC033494.1 AAH33494.1
CR536517.1 CAG38755.1
Y15056.1 CAA75341.1

Target Copy Number Variation Details

DGV Version
Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr16:10001 - 2723164 on Build GRCh38 Duplication SNORD60 NDUFB10 JMJD8 AXIN1 GNPTG TPSG1 LOC101929280 LMF1 IFT140 SNRNP25 MIR3180-5 LOC107984876 C16orf59 SOX8 MIR940 TRAF7 NUBP2 EME2 C1QTNF8 TBC1D24 RPL3L HBZ NHLRC4 MIR6859-4 C16orf91 MIR3177 NPW RAB26 TBL3 LOC105371045 MIR1225 SNORA10 FBXL16 MSRB1 LOC106660606 GNG13 RGS11 SSTR5-AS1 LOC105371038 CCDC154 MIR662 HS3ST6 HAGH DDX11L10 MIR5587 TMEM8A ABCA3 FLJ42627 RNF151 HBQ1 FAHD1 MEIOB RNPS1 ABCA17P PDPK1 CEMP1 LOC105371046 PDIA2 PGP CRAMP1 SLC9A3R2 METTL26 ECI1 PIGQ LOC105371047 RHOT2 MSLN NTHL1 MIR4516 SNHG9 PRSS29P SNORA64 MCRIP2 MIR6768 NARFL KCTD5 HAGHL CASKIN1 TPSD1 SPSB3 MIR6511B1 UBE2I SYNGR3 PRR25 LOC652276 TPSAB1 PKD1 TPSB2 NME3 CLCN7 PTX4 DECR2 FAM173A NOXO1 LOC100287175 PRSS27 SSTR5 FAM234A CAPN15 HBA2 RAB11FIP3 DNASE1L2 SNHG19 NME4 LOC105371184 LUC7L MAPK8IP3 ERVK13-1 GFER MIR4717 POLR3K METRN CHTF18 LINC00235 IGFALS HBM WDR24 TSC2 WDR90 HN1L UNKL MIR3176 BAIAP3 ATP6V0C STUB1 E4F1 LMF1-AS1 AMDHD2 MIR3677 PRR35 CCDC78 MPG SNORA78 RPUSD1 MRPS34 LOC105371049 MLST8 RAB40C MRPL28 ARHGDIG WFIKKN1 TELO2 MIR6767 CCNF LOC729652 RHBDF1 LOC107987233 RPL23AP5 TMEM204 LOC100134368 HBA1 MIR3178 NPRL3 TSR3 WASIR2 LINC00254 BRICD5 NTN3 CACNA1H ZNF598 RHBDL1 RPS2
esv2760067 Chr16:2486824 - 2820535 on Build GRCh38 Gain+Loss FLJ42627 LOC652276 PRSS41 PRSS33 KCTD5 PDPK1 MIR3178 CEMP1 PRSS27 PRSS21 ATP6V0C AMDHD2 SRRM2 SRRM2-AS1 TBC1D24 ERVK13-1 TCEB2
dgv2693n100 Chr16:2593295 - 2676863 on Build GRCh38 Gain FLJ42627 LOC652276 PDPK1 ERVK13-1
esv3637634 Chr16:2586284 - 2610862 on Build GRCh38 Gain LOC652276 PDPK1
nsv833122 Chr16:2501717 - 2663937 on Build GRCh38 Loss FLJ42627 LOC652276 ATP6V0C AMDHD2 PDPK1 MIR3178 TBC1D24 CEMP1 ERVK13-1
nsv1052260 Chr16:2074546 - 2629655 on Build GRCh38 Gain SNORD60 LOC652276 PKD1 RNPS1 ABCA17P PDPK1 CEMP1 LOC105371049 MLST8 MIR3180-5 PGP C16orf59 MIR940 TRAF7 DNASE1L2 ECI1 SNHG19 TBC1D24 MIR4717 MIR4516 MIR6767 CCNF LOC729652 RAB26 MIR6768 MIR1225 MIR3178 LOC106660606 TSC2 CASKIN1 MIR6511B1 ATP6V0C E4F1 AMDHD2 MIR3677 BRICD5 NTN3 ABCA3
nsv833123 Chr16:2561247 - 2764988 on Build GRCh38 Gain+Loss FLJ42627 LOC652276 SRRM2 SRRM2-AS1 KCTD5 PDPK1 ERVK13-1 PRSS27
dgv780e212 Chr16:2595646 - 2700191 on Build GRCh38 Gain FLJ42627 LOC652276 KCTD5 PDPK1 ERVK13-1

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