Assay Design



Gene Transcripts

Gene Symbol
CASC15
Entrez Gene ID
401237
Gene Name
cancer susceptibility candidate 15 (non-protein coding)
Gene Aliases
LINC00340
Chromosome Location
Chr.6: 21666444 - 22194400 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_015410.1 1 - 2 194 148
GenBank mRNA AK026189.1 - 1 - 2 194 148
AK300802.1 - 1 - 2 223 148


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA HY067675.1 - 1 - 2 225 Chr. 6 - 21666413 - 21668881 [+] on Build GRCh38 148
GenBankmRNA DC386898.1 - 1 - 2 223 Chr. 6 - 21666415 - 21743012 [+] on Build GRCh38 148
GenBankmRNA HY064472.1 - 1 - 2 195 Chr. 6 - 21666444 - 21754590 [+] on Build GRCh38 148
GenBankmRNA DR002897.1 - 1 - 2 220 Chr. 6 - 21666414 - 21802690 [+] on Build GRCh38 148
GenBankmRNA HY100767.1 - 1 - 2 225 Chr. 6 - 21666413 - 21668865 [+] on Build GRCh38 148
GenBankmRNA HY076942.1 - 1 - 2 195 Chr. 6 - 21666444 - 21668935 [+] on Build GRCh38 148
GenBankmRNA CN361151.1 - 1 - 2 153 Chr. 6 - 21666485 - 21909581 [+] on Build GRCh38 148
GenBankmRNA HY057740.1 - 1 - 2 196 Chr. 6 - 21666442 - 21783676 [+] on Build GRCh38 148
GenBankmRNA DA587435.1 - 1 - 2 194 Chr. 6 - 21666444 - 21681015 [+] on Build GRCh38 148


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream SRY-box 4 SOX4 EVI16 -67.8kb Sense Chr. - 21593741 - 21598619 on Build GRCh38
Downstream neuroblastoma associated transcript 1 NBAT1 CASC14, NBAT-1 465.7kb Anti-sense Chr. - 22134602 - 22147193 on Build GRCh38

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