Product Details

SNP ID

rs139417866

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.17:20011956 on Build GRCh38

Set Membership

Context Sequence [VIC/FAM]

GAACATTTTTCTTCTCCCTCAAGTA[C/T]ATTCTTTAGAAATTACTTCAGCAAT

Phenotype

MIM: 608793

Polymorphism

C/T, Transition Substitution

Allele Nomenclature

Literature Links

SPECC1 PubMed Links

Additional Information

For this assay, SNP(s) [rs142469785] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

SPECC1

Gene Name

sperm antigen with calponin homology and coiled-coil domains 1

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001033553.2		Intron			NP_001028725.1
NM_001033554.2		Intron			NP_001028726.1
NM_001033555.2		Intron			NP_001028727.1
NM_001243438.1		Intron			NP_001230367.1
NM_001243439.1		Intron			NP_001230368.1
NM_152904.4		Intron			NP_690868.3
XM_005256860.2		Intron			XP_005256917.1
XM_011524075.1		Intron			XP_011522377.1
XM_017025317.1		Intron			XP_016880806.1
XM_017025318.1		Intron			XP_016880807.1
XM_017025319.1		Intron			XP_016880808.1
XM_017025320.1		Intron			XP_016880809.1
XM_017025321.1		Intron			XP_016880810.1
XM_017025322.1		Intron			XP_016880811.1
XM_017025323.1		Intron			XP_016880812.1
XM_017025324.1		Intron			XP_016880813.1
XM_017025325.1		Intron			XP_016880814.1

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