Product Details

SNP ID

rs138720439

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.6:28995513 on Build GRCh38

Set Membership

Context Sequence [VIC/FAM]

CCACAATCCCTGCATTGATAGGGCT[C/T]CTCCCCTGTATGCTCTCGTTCATGA

Phenotype

Polymorphism

C/T, Transition Substitution

Allele Nomenclature

Literature Links

HCG16 PubMed Links

Additional Information

For this assay, SNP(s) [rs9295783] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

HCG16

Gene Name

HLA complex group 16 (non-protein coding)

There are no transcripts associated with this gene.

Gene

ZNF311

Gene Name

zinc finger protein 311

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001010877.3	1952	Missense Mutation	AAG,GAG	K497E	NP_001010877.2
NM_001318534.1	1952	Missense Mutation	AAG,GAG	K405E	NP_001305463.1
NM_001318535.1	1952	Missense Mutation	AAG,GAG	K405E	NP_001305464.1
XM_005249019.3	1952	Missense Mutation	AAG,GAG	K530E	XP_005249076.1
XM_006715067.2	1952	Missense Mutation	AAG,GAG	K530E	XP_006715130.1
XM_011514510.1	1952	Missense Mutation	AAG,GAG	K530E	XP_011512812.1
XM_011514511.2	1952	Missense Mutation	AAG,GAG	K530E	XP_011512813.1
XM_011514512.1	1952	Missense Mutation	AAG,GAG	K522E	XP_011512814.1
XM_011514513.1	1952	Missense Mutation	AAG,GAG	K521E	XP_011512815.1
XM_011514514.1	1952	Missense Mutation	AAG,GAG	K505E	XP_011512816.1
XM_011514516.1	1952	Missense Mutation	AAG,GAG	K449E	XP_011512818.1
XM_011514517.1	1952	Missense Mutation	AAG,GAG	K405E	XP_011512819.1
XM_011514518.1	1952	Missense Mutation	AAG,GAG	K405E	XP_011512820.1
XM_017010756.1	1952	Missense Mutation	AAG,GAG	K530E	XP_016866245.1
XM_017010757.1	1952	Missense Mutation	AAG,GAG	K530E	XP_016866246.1
XM_017010758.1	1952	Missense Mutation	AAG,GAG	K497E	XP_016866247.1
XM_017010759.1	1952	Missense Mutation	AAG,GAG	K497E	XP_016866248.1
XM_017010760.1	1952	Missense Mutation	AAG,GAG	K449E	XP_016866249.1
XM_017010761.1	1952	Missense Mutation	AAG,GAG	K405E	XP_016866250.1

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