Product Details

SNP ID

rs201900739

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.5:179678675 on Build GRCh38

Set Membership

Context Sequence [VIC/FAM]

ATCTTCCTCTGCCCGGCGCGCGCCG[C/T]AGCCGTCGGGATCACCTCGGGGTTG

Phenotype

MIM: 114217

Polymorphism

C/T, Transition Substitution

Allele Nomenclature

Literature Links

CANX PubMed Links

Additional Information

For this assay, SNP(s) [rs78613293] are located under a probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

CANX

Gene Name

calnexin

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001024649.1	1546	Intron			NP_001019820.1
NM_001746.3	1546	Intron			NP_001737.1
XM_011534664.1	1546	Intron			XP_011532966.1
XM_011534665.2	1546	UTR 5			XP_011532967.1

Gene

CBY3

Gene Name

chibby family member 3

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001164444.1	1546	Missense Mutation	ACG,GCG	T213A	NP_001157916.1
XM_017009726.1	1546	Missense Mutation	ACG,GCG	T212A	XP_016865215.1

Gene

LOC105377763

Gene Name

uncharacterized LOC105377763

There are no transcripts associated with this gene.

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