Product Details

SNP ID: rs199588073
Assay Type: Functionally tested
NCBI dbSNP Submissions: NA
Location: Chr.6:31589213 on Build GRCh38
Set Membership
Context Sequence [VIC/FAM]: GAAAGTTCAGAGTTGGGGGAATCCG[A/G]AGAGAGTAGATTTGGCATCTGGAGA
Phenotype: MIM: 109170 MIM: 600978 MIM: 611550
Polymorphism: A/G, Transition substitution
Allele Nomenclature
Literature Links: LST1 PubMed Links

Gene Details

Gene: LST1
Gene Name: leukocyte specific transcript 1

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001166538.1	779	Intron			NP_001160010.1
NM_007161.3	779	Intron			NP_009092.3
NM_205837.2	779	Intron			NP_995309.2
NM_205838.2	779	Intron			NP_995310.2
NM_205839.2	779	Intron			NP_995311.2
NM_205840.2	779	Intron			NP_995312.2
XM_006715206.3	779	Intron			XP_006715269.1
XM_006715209.3	779	Intron			XP_006715272.1
XM_006715210.3	779	Intron			XP_006715273.1
XM_011514914.2	779	Intron			XP_011513216.1

Gene: LTB
Gene Name: lymphotoxin beta

There are no transcripts associated with this gene.

Gene: NCR3
Gene Name: natural cytotoxicity triggering receptor 3

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001145466.1	779	Missense Mutation	TCC,TTC	S172F	NP_001138938.1
NM_001145467.1	779	Intron			NP_001138939.1
NM_147130.2	779	Intron			NP_667341.1
XM_006715049.3	779	Intron			XP_006715112.1
XM_011514459.2	779	Intron			XP_011512761.1

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