Product Details

SNP ID

rs1823696

Assay Type

Functionally Tested

NCBI dbSNP Submissions

70

Location

Chr.1:202198048 on Build GRCh38

Set Membership

HapMap

Context Sequence [VIC/FAM]

CAACCCCCATTCAGACTGCTGATTG[C/T]TTTCTTACGAATTCACTCCCTTTAA

Phenotype

MIM: 606653

Polymorphism

C/T, Transition Substitution

Allele Nomenclature

Literature Links

LGR6 PubMed Links

Additional Information

For this assay, SNP(s) [rs139885528] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

LGR6

Gene Name

leucine rich repeat containing G protein-coupled receptor 6

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001017403.1		Intron			NP_001017403.1
NM_001017404.1		Intron			NP_001017404.1
NM_021636.2		Intron			NP_067649.2
XM_005245404.3		Intron			XP_005245461.1
XM_011509838.2		Intron			XP_011508140.1
XM_011509839.2		Intron			XP_011508141.1
XM_011509840.2		Intron			XP_011508142.1
XM_011509841.2		Intron			XP_011508143.1
XM_011509842.2		Intron			XP_011508144.1
XM_011509843.2		Intron			XP_011508145.1
XM_011509844.2		Intron			XP_011508146.1
XM_011509846.2		Intron			XP_011508148.1
XM_017001996.1		Intron			XP_016857485.1
XM_017001997.1		Intron			XP_016857486.1
XM_017001998.1		Intron			XP_016857487.1

Gene

PTPRVP

Gene Name

protein tyrosine phosphatase, receptor type V, pseudogene

There are no transcripts associated with this gene.

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