Product Details

SNP ID

rs14842

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.22:46243560 on Build GRCh38

Set Membership

HapMap

Context Sequence [VIC/FAM]

AGAAAATGGCTATAAAATAACCTTA[A/T]TTTTAAAAAAAAATCTTGGGTCTTC

Phenotype

MIM: 170998

Polymorphism

A/T, Transversion Substitution

Allele Nomenclature

Literature Links

CDPF1 PubMed Links

Additional Information

For this assay, SNP(s) [rs77378083] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

CDPF1

Gene Name

cysteine rich DPF motif domain containing 1

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_207327.4	9853	Intron			NP_997210.3
XM_011529960.1	9853	Intron			XP_011528262.1
XM_011529962.2	9853	Intron			XP_011528264.1
XM_011529963.1	9853	Intron			XP_011528265.1
XM_011529964.1	9853	Intron			XP_011528266.1
XM_011529965.2	9853	Intron			XP_011528267.1

Gene

PPARA

Gene Name

peroxisome proliferator activated receptor alpha

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001001928.2	9853	UTR 3			NP_001001928.1
NM_005036.4	9853	UTR 3			NP_005027.2
XM_005261655.3	9853	Intron			XP_005261712.1
XM_005261656.3	9853	Intron			XP_005261713.1
XM_006724269.3	9853	Intron			XP_006724332.1
XM_006724270.3	9853	Intron			XP_006724333.1
XM_011530239.2	9853	Intron			XP_011528541.1
XM_011530240.2	9853	Intron			XP_011528542.1
XM_011530241.2	9853	Intron			XP_011528543.1
XM_011530242.2	9853	Intron			XP_011528544.1
XM_011530243.2	9853	Intron			XP_011528545.1
XM_011530244.2	9853	Intron			XP_011528546.1
XM_011530245.2	9853	Intron			XP_011528547.1
XM_017028839.1	9853	Intron			XP_016884328.1
XM_017028840.1	9853	Intron			XP_016884329.1

View Full Product Details