Product Details

SNP ID

rs2032174

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.18:12792955 on Build GRCh38

Set Membership

HapMap

Context Sequence [VIC/FAM]

TAAGCCTTATGCAGAAATCTTATGT[A/G]GCATATAAAGAGACAAGGCAGAGAT

Phenotype

MIM: 176887

Polymorphism

A/G, Transition Substitution

Allele Nomenclature

Literature Links

PTPN2 PubMed Links

Additional Information

For this assay, SNP(s) [rs142399030,rs146387119] are located under a probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

PTPN2

Gene Name

protein tyrosine phosphatase, non-receptor type 2

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001207013.1	2832	Intron			NP_001193942.1
NM_001308287.1	2832	UTR 3			NP_001295216.1
NM_002828.3	2832	UTR 3			NP_002819.2
NM_080422.2	2832	Intron			NP_536347.1
NM_080423.2	2832	Intron			NP_536348.1
XM_005258124.3	2832	UTR 3			XP_005258181.1
XM_005258125.3	2832	Intron			XP_005258182.1
XM_011525705.2	2832	Intron			XP_011524007.1
XM_011525706.2	2832	Intron			XP_011524008.1
XM_011525707.2	2832	Intron			XP_011524009.1
XM_017025884.1	2832	Intron			XP_016881373.1
XM_017025885.1	2832	Intron			XP_016881374.1
XM_017025886.1	2832	Intron			XP_016881375.1
XM_017025887.1	2832	Intron			XP_016881376.1
XM_017025888.1	2832	Intron			XP_016881377.1

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