Product Details

SNP ID

rs3087519

Assay Type

Functionally tested

NCBI dbSNP Submissions

NA

Location

Chr.16:10929351 on Build GRCh38

Set Membership

HapMap

Context Sequence [VIC/FAM]

AACTCTGGCTGGGTTCCTGTAAACA[C/T]CCATCGCAGCTGCAAATAATCAGAA

Phenotype

MIM: 600005

Polymorphism

C/T, Transition substitution

Allele Nomenclature

Literature Links

CIITA PubMed Links

Gene Details

Gene

CIITA

Gene Name

class II, major histocompatibility complex, transactivator

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_000246.3	1809	Intron			NP_000237.2
NM_001286402.1	1809	Intron			NP_001273331.1
NM_001286403.1	1809	Intron			NP_001273332.1
XM_006720880.3	1809	Intron			XP_006720943.2
XM_011522484.2	1809	Intron			XP_011520786.1
XM_011522485.2	1809	Intron			XP_011520787.1
XM_011522486.2	1809	Intron			XP_011520788.1
XM_011522487.2	1809	Intron			XP_011520789.1
XM_011522488.2	1809	Intron			XP_011520790.1
XM_011522489.2	1809	Intron			XP_011520791.1
XM_011522490.2	1809	Intron			XP_011520792.1
XM_011522491.2	1809	Intron			XP_011520793.1
XM_011522492.2	1809	Intron			XP_011520794.1
XM_011522493.2	1809	Intron			XP_011520795.1
XM_011522494.2	1809	Intron			XP_011520796.1
XM_011522495.2	1809	Intron			XP_011520797.1
XM_011522496.2	1809	Intron			XP_011520798.1

Gene

DEXI

Gene Name

Dexi homolog

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_014015.3	1809	Intron			NP_054734.2
XM_011522455.2	1809	Intron			XP_011520757.1
XM_017023171.1	1809	UTR 3			XP_016878660.1

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