Product Details

SNP ID

rs11745888

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.5:150589367 on Build GRCh38

Set Membership

HapMap

Context Sequence [VIC/FAM]

GCAAGAACCACCACACCCAGCCTTA[C/T]AGATAATTTCTGAGCAGCACATGTA

Phenotype

MIM: 608155

Polymorphism

C/T, Transition Substitution

Allele Nomenclature

Literature Links

SYNPO PubMed Links

Additional Information

For this assay, SNP(s) [rs74966738] are located under a probe and SNP(s) [rs144183632] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

SYNPO

Gene Name

synaptopodin

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001109974.2		Intron			NP_001103444.1
NM_001166208.1		Intron			NP_001159680.1
NM_001166209.1		Intron			NP_001159681.1
NM_007286.5		Intron			NP_009217.3
XM_005268370.1		Intron			XP_005268427.1
XM_005268371.1		Intron			XP_005268428.1
XM_006714755.3		Intron			XP_006714818.1
XM_011537552.2		Intron			XP_011535854.1
XM_017009007.1		Intron			XP_016864496.1
XM_017009008.1		Intron			XP_016864497.1

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