Product Details

SNP ID

rs17426593

Assay Type

Functionally tested

NCBI dbSNP Submissions

NA

Location

Chr.6:32640300 on Build GRCh38

Set Membership

HapMap

Context Sequence [VIC/FAM]

TCCTTAATAGTAGACCATGCCTGAT[C/T]GGTGTTTTACACATCTCCGGCTATG

Phenotype

MIM: 146880

Polymorphism

C/T, Transition substitution

Allele Nomenclature

Literature Links

HLA-DQA1 PubMed Links

Additional Information

For this assay, SNP(s) [rs28383404] are located under a probe and SNP(s) [rs28383403,rs28383405,rs74395243] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

HLA-DQA1

Gene Name

major histocompatibility complex, class II, DQ alpha 1

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_002122.3		Intron			NP_002113.2
XM_006715079.3		Intron			XP_006715142.1

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