Product Details

SNP ID

rs61617938

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.16:11551770 on Build GRCh38

Set Membership

Context Sequence [VIC/FAM]

TTGCAGGAGCCCAGGAGATCAAAGC[C/T]GCGGAGAGCTACGATCGTACCACTG

Phenotype

MIM: 603795

Polymorphism

C/T, Transition Substitution

Allele Nomenclature

Literature Links

LITAF PubMed Links

Additional Information

For this assay, SNP(s) [rs57456743] are located under a probe and SNP(s) [rs148088828] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

LITAF

Gene Name

lipopolysaccharide induced TNF factor

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001136472.1	482	Intron			NP_001129944.1
NM_001136473.1	482	Missense Mutation	AGC,GGC	S138G	NP_001129945.1
NM_004862.3	482	Intron			NP_004853.2
XM_006720982.2	482	Intron			XP_006721045.1
XM_006720983.3	482	Intron			XP_006721046.1
XM_006720984.3	482	Intron			XP_006721047.1
XM_006720985.3	482	Intron			XP_006721048.1
XM_011522754.2	482	Intron			XP_011521056.1
XM_017023896.1	482	Intron			XP_016879385.1

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