Product Details

SNP ID

rs2553808

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.11:35142561 on Build GRCh38

Set Membership

HapMap

Context Sequence [VIC/FAM]

AATTGAGCATTAGAGACTCCGCCCC[C/T]TGCTGGGAGTTAGAACTTTAGCTGT

Phenotype

MIM: 107269

Polymorphism

C/T, Transition Substitution

Allele Nomenclature

Literature Links

CD44 PubMed Links

Additional Information

For this assay, SNP(s) [rs75219225] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

CD44

Gene Name

CD44 molecule (Indian blood group)

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_000610.3		Intron			NP_000601.3
NM_001001389.1		Intron			NP_001001389.1
NM_001001390.1		Intron			NP_001001390.1
NM_001001391.1		Intron			NP_001001391.1
NM_001001392.1		Intron			NP_001001392.1
NM_001202555.1		Intron			NP_001189484.1
NM_001202556.1		Intron			NP_001189485.1
NM_001202557.1		Intron			NP_001189486.1
XM_005253231.2		Intron			XP_005253288.1
XM_005253232.2		Intron			XP_005253289.1
XM_005253233.2		Intron			XP_005253290.1
XM_005253234.2		Intron			XP_005253291.1
XM_005253235.2		Intron			XP_005253292.1
XM_005253238.2		Intron			XP_005253295.1
XM_005253239.2		Intron			XP_005253296.1
XM_005253240.2		Intron			XP_005253297.1
XM_006718388.1		Intron			XP_006718451.1
XM_006718390.3		Intron			XP_006718453.1
XM_011520482.1		Intron			XP_011518784.1
XM_011520483.1		Intron			XP_011518785.1
XM_011520484.1		Intron			XP_011518786.1
XM_011520485.1		Intron			XP_011518787.1
XM_011520486.1		Intron			XP_011518788.1
XM_011520487.2		Intron			XP_011518789.1
XM_011520488.1		Intron			XP_011518790.1
XM_011520489.2		Intron			XP_011518791.1
XM_017018583.1		Intron			XP_016874072.1
XM_017018584.1		Intron			XP_016874073.1
XM_017018585.1		Intron			XP_016874074.1

Gene

LOC100507144

Gene Name

uncharacterized LOC100507144

There are no transcripts associated with this gene.

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