Product Details

SNP ID

rs1109555

Assay Type

Functionally Tested

NCBI dbSNP Submissions

NA

Location

Chr.19:1086788 on Build GRCh38

Set Membership

HapMap

Context Sequence [VIC/FAM]

AAGGGAACCCCCCGCCACGGGGCCC[C/T]GCGAGGTGGGAGCCCGGGTGGTCTT

Phenotype

MIM: 601155 MIM: 180664

Polymorphism

C/T, Transition Substitution

Allele Nomenclature

Literature Links

ARHGAP45 PubMed Links

Additional Information

For this assay, SNP(s) [rs112160679] are located under a primer sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Gene Details

Gene

ARHGAP45

Gene Name

Rho GTPase activating protein 45

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001258328.2	4231	UTR 3			NP_001245257.1
NM_001282334.1	4231	UTR 3			NP_001269263.1
NM_001282335.1	4231	UTR 3			NP_001269264.1
NM_001321232.1	4231	UTR 3			NP_001308161.1
NM_012292.4	4231	UTR 3			NP_036424.2
XM_006722713.1	4231	Intron			XP_006722776.1
XM_011527858.1	4231	Intron			XP_011526160.1
XM_011527860.2	4231	Intron			XP_011526162.1

Gene

POLR2E

Gene Name

RNA polymerase II subunit E

Transcript Accession	SNP Location	SNP Type	Codon Change	Amino Acid Change	Protein ID
NM_001316323.1	4231	UTR 3			NP_001303252.1
NM_001316324.1	4231	UTR 3			NP_001303253.1
NM_002695.3	4231	UTR 3			NP_002686.2
XM_011528070.2	4231	UTR 3			XP_011526372.1
XM_017026883.1	4231	UTR 3			XP_016882372.1

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