Assay Design

The assay probe spans an exon junction. This assay will detect gDNA.

Gene Transcripts

Gene Symbol: shakB
Entrez Gene ID: 33062
Gene Name: shaking B
Gene Aliases: 2, 3, 6, CG12678, CG1321, CG15451, CG32508, CG34358, Dmel\CG34358, Dmel_CG34358, E81, FBpp0111481, Pas, R-9-29, R9-29, SHAK-B, Shak B, Shak-B, ShakB, W3, inx8, l(1)19Eb, l(1)LB21, l(1)R-10-14, l(1)R-10-3, l(1)R-10-7, l(1)R-9-29, l(1)TH73, l(1)W3, l(1)W3b, lincRNA.1031, nj-156, nj156, pas, pass, shB, shak-B, shkB
Chromosome Location: Chr.X: 20761071 - 20927050 on Build Release_6_plus_ISO1_MT
Species Specific ID (Flybase ID): FBgn0085387

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Amplicon Length
RefSeq	NM_001103568.3	NP_001097038.2	4 - 5	1849	113
	NM_001144750.2	NP_001138222.1	3 - 4	590	113
	NM_001258858.2	NP_001245787.1	7 - 8	1701	113
	NM_001258859.2	NP_001245788.1	8 - 9	2565	113
	NM_001298574.1	NP_001285503.1	7 - 8	2806	113
	NM_078701.3	NP_523425.2	6 - 7	1997	113
	NM_134566.3	NP_608410.2	5 - 6	1101	113
	NM_170660.2	NP_728361.1	3 - 4	1349	113
GenBank mRNA	S78495.1	-	3 - 4	1349	113