Assay Design

The assay probe spans an exon junction. This assay will detect gDNA.

Gene Transcripts

Gene Symbol: ps
Entrez Gene ID: 44258
Gene Name: pasilla
Gene Aliases: BcDNA:RE47781, CG16765, CG16776, CG16777, CG18509, CG42670, CG8144, Dmel\CG42670, Dmel_CG42670, EP(3)3406, NOVA1, PS, cg8144, l(3)10615
Chromosome Location: Chr.3R: 9417940 - 9455500 on Build Release_6_plus_ISO1_MT
Species Specific ID (Flybase ID): FBgn0261552

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Amplicon Length
RefSeq	NM_001043226.1	NP_001036691.1	4 - 5	1131	92
	NM_001043227.2	NP_001036692.1	6 - 7	1984	92
	NM_001043230.3	NP_001036695.1	4 - 5	1681	92
	NM_001043232.1	NP_001036697.1	4 - 5	1004	92
	NM_001202270.2	NP_001189199.1	5 - 6	1719	92
	NM_001202271.2	NP_001189200.1	5 - 6	2410	92
	NM_001202272.2	NP_001189201.1	5 - 6	1918	92
	NM_001202273.2	NP_001189202.1	4 - 5	1684	92
	NM_001202274.2	NP_001189203.1	6 - 7	1960	92
	NM_001275485.1	NP_001262414.1	3 - 4	938	92
	NM_001275486.1	NP_001262415.1	5 - 6	2070	92
	NM_001300323.1	NP_001287252.1	5 - 6	1675	92
	NM_001300324.1	NP_001287253.1	5 - 6	1335	92
	NM_169280.4	NP_731351.3	5 - 6	2182	92
	NM_169281.4	NP_731352.3	5 - 6	1747	92
	NM_169283.2	NP_731354.1	4 - 5	1004	92
	NM_169284.2	NP_731355.1	4 - 5	1131	92
	NM_169285.3	NP_731356.1	3 - 4	1065	92
GenBank mRNA	AF220420.1	-	4 - 5	984	92
	AF220421.1	-	4 - 5	983	92
	AF220422.1	-	4 - 5	1084	92
	AF220423.1	-	3 - 4	992	92
	AY089247.1	-	4 - 5	1003	92