Assay Design

The assay probe spans an exon junction. This assay will detect gDNA.

Gene Transcripts

Gene Symbol: cnc
Entrez Gene ID: 42743
Gene Name: cap-n-collar
Gene Aliases: 5134, BcDNA:RE05559, CG13826, CG17894, CG43286, CG4566, CG4578, CNC, CNC_DROME, CnC, Cnc, Cnc-C, CncC, DM12, Dmel\CG43286, Dmel_CG43286, NRF2, Nrf2, anon-WO0153538.6, anon-WO0153538.7, cnc-C, cncC, cncC/Nrf2, dNrf2, l(3)03921, l(3)j5E7, nrf2
Chromosome Location: Chr.3R: 23185580 - 23226711 on Build Release_6_plus_ISO1_MT
Species Specific ID (Flybase ID): FBgn0262975

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Amplicon Length
RefSeq	NM_001260327.2	NP_001247256.1	2 - 3	1355	65
	NM_001260328.1	NP_001247257.1	2 - 3	1332	65
	NM_001260329.2	NP_001247258.1	9 - 10	3362	65
	NM_001260330.1	NP_001247259.1	10 - 11	4565	65
	NM_001260331.1	NP_001247260.1	10 - 11	4734	65
	NM_001260332.2	NP_001247261.1	9 - 10	3349	65
	NM_001260333.2	NP_001247262.1	9 - 10	3358	65
	NM_001275935.1	NP_001262864.1	10 - 11	4481	65
	NM_001275936.1	NP_001262865.1	4 - 5	2041	65
	NM_170053.3	NP_732833.1	10 - 11	4481	65
	NM_170054.4	NP_732834.1	6 - 7	2960	65
	NM_170055.2	NP_732835.1	1 - 2	1257	65
	NM_170056.2	NP_732836.1	2 - 3	1350	65
	NM_170057.2	NP_732837.1	2 - 3	1330	65
	NM_170058.2	NP_732838.2	8 - 9	2899	65
	NM_170059.3	NP_732839.1	2 - 3	1701	65
GenBank mRNA	AY061154.1	-	2 - 3	1355	65