Assay Design

The assay probe spans an exon junction.

Gene Transcripts

Gene Symbol
CD44
Entrez Gene ID
960
Gene Name
CD44 molecule (Indian blood group)
Gene Aliases
CDW44, CSPG8, ECMR-III, HCELL, HUTCH-I, IN, LHR, MC56, MDU2, MDU3, MIC4, Pgp1
Chromosome Location
Chr.11: 35138870 - 35232402 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_000610.3 NP_000601.3 17 - 18 2463 86
NM_001001389.1 NP_001001389.1 16 - 17 2334 86
NM_001001390.1 NP_001001390.1 11 - 12 1716 86
NM_001001391.1 NP_001001391.1 8 - 9 1320 86
NM_001001392.1 NP_001001392.1 3 - 4 700 86
NM_001202555.1 NP_001189484.1 9 - 10 1524 86
NM_001202556.1 NP_001189485.1 7 - 8 1257 86
XM_005253231.2 XP_005253288.1 17 - 18 2193 86
XM_005253232.2 XP_005253289.1 17 - 18 2190 86
XM_005253233.2 XP_005253290.1 16 - 17 2073 86
XM_005253234.2 XP_005253291.1 16 - 17 2070 86
XM_005253235.2 XP_005253292.1 16 - 17 2064 86
XM_005253238.2 XP_005253295.1 13 - 14 1704 86
XM_005253239.2 XP_005253296.1 13 - 14 1698 86
XM_005253240.2 XP_005253297.1 12 - 13 1569 86
XM_006718388.1 XP_006718451.1 17 - 18 2187 86
XM_011520482.1 XP_011518784.1 16 - 17 1989 86
XM_011520483.1 XP_011518785.1 15 - 16 1938 86
XM_011520484.1 XP_011518786.1 15 - 16 1935 86
XM_011520485.1 XP_011518787.1 15 - 16 1932 86
XM_011520486.1 XP_011518788.1 12 - 13 1575 86
XM_011520488.1 XP_011518790.1 10 - 11 1239 86
XM_017018583.1 XP_016874072.1 16 - 17 2061 86
XM_017018584.1 XP_016874073.1 10 - 11 1302 86
XM_017018585.1 XP_016874074.1 9 - 10 1173 86
GenBank mRNA AF098641.1 - 3 - 4 284 86
AJ251595.1 - 17 - 18 2207 86
AK129808.1 - 7 - 8 715 86
AK290424.1 - 8 - 9 886 86
AK297776.1 - 8 - 9 926 86
AK304467.1 - 7 - 8 823 86
AK307707.1 - 7 - 8 781 86
AL832642.2 - 8 - 9 1320 86
AY101192.1 - 11 - 12 1398 86
AY101193.1 - 8 - 9 1003 86
BC004372.1 - 16 - 17 2031 86
BC052287.1 - 7 - 8 874 86
BC067348.1 - 8 - 9 1003 86
EF581837.1 - 9 - 10 1101 86
FJ216964.1 - 7 - 8 823 86
M24915.1 - 8 - 9 1001 86
M59040.1 - 8 - 9 914 86
S66400.1 - 11 - 12 1332 86
U40373.1 - 8 - 9 950 86
X55150.1 - 11 - 12 1405 86
X56794.1 - 11 - 12 1397 86
X66733.1 - 16 - 17 2029 86

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