Assay Design

The assay primers and probes lie within a single exon. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
CDC42EP3
Entrez Gene ID
10602
Gene Name
CDC42 effector protein 3
Gene Aliases
BORG2, CEP3, UB1
Chromosome Location
Chr.2: 37641882 - 37672535 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NM_001270436.1 NP_001257365.1 2 - 2 3721 63
NM_001270437.1 NP_001257366.1 2 - 2 3677 63
NM_001270438.1 NP_001257367.1 2 - 2 3653 63
NM_006449.4 NP_006440.2 2 - 2 4312 63
XM_011532482.2 XP_011530784.1 2 - 2 4118 63
GenBank mRNA AK055915.1 - 1 - 1 851 63


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA BU194600.1 - 1 206 Chr. 2 - 37642669 - 37643479 [-] on Build GRCh38 63
GenBankmRNA R19529.1 - 1 Chr. 2 - 37643113 - 37643429 [-] on Build GRCh38 63
GenBankmRNA DA252943.1 - 1 404 Chr. 2 - 37643117 - 37643687 [-] on Build GRCh38 63
GenBankmRNA CD242069.1 - 1 128 Chr. 2 - 37642744 - 37643412 [-] on Build GRCh38 63
GenBankmRNA CN417889.1 - 1 552 Chr. 2 - 37643101 - 37643837 [-] on Build GRCh38 63
GenBankmRNA R13631.1 - 90 Chr. - - [-] on Build 63
GenBankmRNA AL133837.1 - 1 672 Chr. 2 - 37643242 - 37643957 [-] on Build GRCh38 63
GenBankmRNA BG168552.1 - 1 490 Chr. 2 - 37643169 - 37643766 [-] on Build GRCh38 63
GenBankmRNA CF121340.1 - 1 347 Chr. 2 - 37642926 - 37643623 [-] on Build GRCh38 63


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream glutaminyl-peptide cyclotransferase QPCT GCT, QC, sQC -268.6kb Anti-sense Chr. - 37344610 - 37373322 on Build GRCh38
Downstream long intergenic non-protein coding RNA 211 LINC00211 NCRNA00211 182.1kb Sense Chr. - 37826247 - 37875863 on Build GRCh38

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