Assay Design

The assay probe spans an exon junction. This assay will detect gDNA.

Gene Transcripts

Gene Symbol
SNHG1
Entrez Gene ID
23642
Gene Name
small nucleolar RNA host gene 1
Gene Aliases
LINC00057, NCRNA00057, U22HG, UHG
Chromosome Location
Chr.11: 62851988 - 62855888 on Build GRCh38
Interrogated Sequence Translated Protein Exon Boundary Assay Location Amplicon Length
RefSeq NR_003098.1 9 - 10 395 100


Non Gene Transcripts

Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA CU453800.1 - 5 - 6 227 Chr. 11 - 62852177 - 62854557 [-] on Build GRCh38 100
GenBankmRNA CB145643.1 - 7 - 8 301 Chr. 11 - 62852510 - 62855885 [-] on Build GRCh38 100
GenBankmRNA CN386538.1 - 7 - 8 320 Chr. 11 - 62852434 - 62855208 [-] on Build GRCh38 100
GenBankmRNA BP430181.1 - 3 - 4 133 Chr. 11 - 62852406 - 62853850 [-] on Build GRCh38 100
GenBankmRNA CU445983.1 - 5 - 6 227 Chr. 11 - 62852252 - 62854557 [-] on Build GRCh38 100
GenBankmRNA AA160645.1 - 6 - 7 214 Chr. 11 - 62852282 - 62854908 [-] on Build GRCh38 100
GenBankmRNA BM746222.1 - 9 - 10 392 Chr. 11 - 62852614 - 62855885 [-] on Build GRCh38 100
GenBankmRNA BG576308.1 - 6 - 7 272 Chr. 11 - 62852144 - 62855465 [-] on Build GRCh38 100
GenBankmRNA CN386542.1 - 8 - 9 375 Chr. 11 - 62852467 - 62855467 [-] on Build GRCh38 100
GenBankmRNA BQ719301.1 - 8 - 9 358 Chr. 11 - 62852207 - 62855453 [-] on Build GRCh38 100
GenBankmRNA BI253434.1 - 8 - 9 372 Chr. 11 - 62852193 - 62855467 [-] on Build GRCh38 100
GenBankmRNA BX397597.2 - 2 - 3 Chr. 11 - 62852022 - 62855463 [+] on Build GRCh38 100
GenBankmRNA BM710724.1 - 8 - 9 373 Chr. 11 - 62852533 - 62855467 [-] on Build GRCh38 100
GenBankmRNA BG929288.1 - 4 - 5 233 Chr. 11 - 62852310 - 62854052 [-] on Build GRCh38 100
GenBankmRNA BM762980.1 - 9 - 10 389 Chr. 11 - 62852491 - 62855882 [-] on Build GRCh38 100
GenBankmRNA BM747357.1 - 9 - 10 390 Chr. 11 - 62852529 - 62855883 [-] on Build GRCh38 100
GenBankmRNA BG495569.1 - 7 - 8 274 Chr. 11 - 62852292 - 62855162 [-] on Build GRCh38 102
GenBankmRNA BQ690328.1 - 8 - 9 371 Chr. 11 - 62852211 - 62855466 [-] on Build GRCh38 100
GenBankmRNA CN386550.1 - 8 - 9 343 Chr. 11 - 62852577 - 62855438 [-] on Build GRCh38 100
GenBankmRNA DR423262.1 - 7 - 8 328 Chr. 11 - 62852424 - 62855216 [-] on Build GRCh38 100
GenBankmRNA AW963561.1 - 8 - 9 373 Chr. 11 - 62852467 - 62855467 [-] on Build GRCh38 100
GenBankmRNA BF918042.1 - 2 - 3 Chr. 11 - 62852546 - 62854919 [+] on Build GRCh38 100
GenBankmRNA BM784849.1 - 6 - 7 257 Chr. 11 - 62852559 - 62854943 [-] on Build GRCh38 100
GenBankmRNA BG614836.1 - 9 - 10 390 Chr. 11 - 62852245 - 62855883 [-] on Build GRCh38 101
GenBankmRNA BI768134.1 - 8 - 9 365 Chr. 11 - 62852465 - 62855460 [-] on Build GRCh38 100
GenBankmRNA DT218171.1 - 7 - 8 333 Chr. 11 - 62852434 - 62855467 [-] on Build GRCh38 100
GenBankmRNA DA727570.1 - 9 - 10 392 Chr. 11 - 62852469 - 62855885 [-] on Build GRCh38 100
GenBankmRNA BI255462.1 - 8 - 9 374 Chr. 11 - 62852217 - 62855467 [-] on Build GRCh38 100
GenBankmRNA BM747384.1 - 9 - 10 390 Chr. 11 - 62852532 - 62855883 [-] on Build GRCh38 100
GenBankmRNA CN386551.1 - 8 - 9 379 Chr. 11 - 62852460 - 62855474 [-] on Build GRCh38 100
GenBankmRNA BU902024.1 - 171 Chr. - - [-] on Build 100
GenBankmRNA AA464349.1 - 8 - 9 369 Chr. 11 - 62852571 - 62855460 [-] on Build GRCh38 100
GenBankmRNA BI334001.1 - 8 - 9 362 Chr. 11 - 62852208 - 62855457 [-] on Build GRCh38 100
GenBankmRNA AI697646.1 - 3 - 4 416 Chr. 11 - 62852608 - 62854136 [-] on Build GRCh38 100
GenBankmRNA CN386555.1 - 8 - 9 375 Chr. 11 - 62852588 - 62855466 [-] on Build GRCh38 100
GenBankmRNA BX337289.2 - 8 - 9 372 Chr. 11 - 62851994 - 62855467 [-] on Build GRCh38 100
GenBankmRNA BX457656.2 - 7 - 8 Chr. 11 - 62852056 - 62855460 [-] on Build GRCh38 100
GenBankmRNA CN337004.1 - 7 - 8 457 Chr. 11 - 62852607 - 62855345 [-] on Build GRCh38 100
GenBankmRNA BM741778.1 - 9 - 10 392 Chr. 11 - 62852450 - 62855885 [-] on Build GRCh38 100
GenBankmRNA BF699462.1 - 9 - 10 393 Chr. 11 - 62852368 - 62855886 [-] on Build GRCh38 101
GenBankmRNA CN386559.1 - 8 - 9 381 Chr. 11 - 62852641 - 62855460 [-] on Build GRCh38 100
GenBankmRNA BF337906.1 - 3 - 4 505 Chr. 11 - 62852419 - 62854230 [-] on Build GRCh38 100
GenBankmRNA BM765988.1 - 9 - 10 392 Chr. 11 - 62852538 - 62855885 [-] on Build GRCh38 100
GenBankmRNA BM754174.1 - 4 - 5 161 Chr. 11 - 62852331 - 62854064 [-] on Build GRCh38 100
GenBankmRNA BG167802.1 - 7 - 8 450 Chr. 11 - 62852618 - 62855596 [-] on Build GRCh38 101
GenBankmRNA CN386537.1 - 8 - 9 365 Chr. 11 - 62852346 - 62855460 [-] on Build GRCh38 100
GenBankmRNA BI258011.1 - 8 - 9 519 Chr. 11 - 62852622 - 62855615 [-] on Build GRCh38 101
GenBankmRNA BI772659.1 - 8 - 9 357 Chr. 11 - 62852204 - 62855451 [-] on Build GRCh38 102
GenBankmRNA BM772121.1 - 9 - 10 392 Chr. 11 - 62852500 - 62855885 [-] on Build GRCh38 100
GenBankmRNA CN386541.1 - 3 - 4 214 Chr. 11 - 62852165 - 62853928 [-] on Build GRCh38 100
GenBankmRNA AW954429.1 - 8 - 9 360 Chr. 11 - 62852468 - 62855455 [-] on Build GRCh38 100
GenBankmRNA BI828157.1 - 7 - 8 327 Chr. 11 - 62852258 - 62855914 [-] on Build GRCh38 100
GenBankmRNA CN386545.1 - 8 - 9 371 Chr. 11 - 62852621 - 62855460 [-] on Build GRCh38 100
GenBankmRNA CU454459.1 - 2 - 3 Chr. 11 - 62852210 - 62854064 [+] on Build GRCh38 100
GenBankmRNA BQ934825.1 - 8 - 9 375 Chr. 11 - 62852148 - 62855467 [-] on Build GRCh38 100
GenBankmRNA CX783853.1 - 8 - 9 642 Chr. 11 - 62852595 - 62855737 [-] on Build GRCh38 100
GenBankmRNA BM772480.1 - 9 - 10 392 Chr. 11 - 62852439 - 62855885 [-] on Build GRCh38 100
GenBankmRNA CN386554.1 - 8 - 9 384 Chr. 11 - 62852447 - 62855467 [-] on Build GRCh38 100
GenBankmRNA HY097673.1 - 8 - 9 339 Chr. 11 - 62852562 - 62855882 [-] on Build GRCh38 100
GenBankmRNA BM772875.1 - 9 - 10 392 Chr. 11 - 62852441 - 62855885 [-] on Build GRCh38 100
GenBankmRNA CU442961.1 - 5 - 6 227 Chr. 11 - 62852155 - 62854557 [-] on Build GRCh38 100
GenBankmRNA BM750058.1 - 5 - 6 185 Chr. 11 - 62852366 - 62854542 [-] on Build GRCh38 100
GenBankmRNA BM770053.1 - 4 - 5 161 Chr. 11 - 62852238 - 62854064 [-] on Build GRCh38 100
GenBankmRNA CN386558.1 - 141 Chr. - - [-] on Build 100
GenBankmRNA BX415837.2 - 2 - 3 Chr. 11 - 62852020 - 62855224 [+] on Build GRCh38 100
GenBankmRNA BX341806.2 - 2 - 3 Chr. 11 - 62852016 - 62855191 [+] on Build GRCh38 100
GenBankmRNA CN337005.1 - 7 - 8 468 Chr. 11 - 62852593 - 62855353 [-] on Build GRCh38 100
GenBankmRNA BG531729.1 - 7 - 8 295 Chr. 11 - 62852266 - 62855885 [-] on Build GRCh38 100
GenBankmRNA BM751992.1 - 9 - 10 390 Chr. 11 - 62852613 - 62855883 [-] on Build GRCh38 100
GenBankmRNA BX415838.2 - 6 - 7 264 Chr. 11 - 62852040 - 62855444 [-] on Build GRCh38 100
GenBankmRNA BX363515.2 - 2 - 3 82 Chr. 11 - 62851988 - 62853592 [-] on Build GRCh38 100
GenBankmRNA AL581383.3 - 2 - 3 Chr. 11 - 62852032 - 62855216 [+] on Build GRCh38 100
GenBankmRNA AV728106.1 - 8 - 9 365 Chr. 11 - 62852319 - 62855460 [-] on Build GRCh38 100
GenBankmRNA BG110221.1 - 130 Chr. - - [-] on Build 100
GenBankmRNA BG527213.1 - 9 - 10 393 Chr. 11 - 62852292 - 62855885 [-] on Build GRCh38 100
GenBankmRNA CN386566.1 - 7 - 8 282 Chr. 11 - 62852550 - 62855172 [-] on Build GRCh38 100
GenBankmRNA HY076972.1 - 8 - 9 338 Chr. 11 - 62852563 - 62855882 [-] on Build GRCh38 100
GenBankmRNA BM771760.1 - 8 - 9 385 Chr. 11 - 62852449 - 62855467 [-] on Build GRCh38 100
GenBankmRNA AL559848.3 - 8 - 9 365 Chr. 11 - 62852053 - 62855460 [-] on Build GRCh38 100
GenBankmRNA BM823449.1 - 8 - 9 363 Chr. 11 - 62852446 - 62855458 [-] on Build GRCh38 100
GenBankmRNA BM848355.1 - 9 - 10 392 Chr. 11 - 62852550 - 62855885 [-] on Build GRCh38 100
GenBankmRNA CN386536.1 - 8 - 9 375 Chr. 11 - 62852433 - 62855467 [-] on Build GRCh38 100
GenBankmRNA BG623014.1 - 9 - 10 Chr. 11 - 62852274 - 62855885 [-] on Build GRCh38 103
GenBankmRNA BM770809.1 - 9 - 10 392 Chr. 11 - 62852636 - 62855885 [-] on Build GRCh38 100
GenBankmRNA BM740049.1 - 8 - 9 387 Chr. 11 - 62852514 - 62855467 [-] on Build GRCh38 100
GenBankmRNA CU445372.1 - 2 - 3 Chr. 11 - 62852021 - 62853592 [+] on Build GRCh38 100
GenBankmRNA CN386544.1 - 8 - 9 356 Chr. 11 - 62852426 - 62855451 [-] on Build GRCh38 100
GenBankmRNA BM772174.1 - 9 - 10 392 Chr. 11 - 62852491 - 62855885 [-] on Build GRCh38 100
GenBankmRNA AL582671.3 - 2 - 3 Chr. 11 - 62852023 - 62855224 [+] on Build GRCh38 100
GenBankmRNA N52726.1 - 5 - 6 218 Chr. 11 - 62852647 - 62854552 [-] on Build GRCh38 100
GenBankmRNA CN386548.1 - 2 - 3 81 Chr. 11 - 62852108 - 62853578 [-] on Build GRCh38 100
GenBankmRNA BM804354.1 - 6 - 7 248 Chr. 11 - 62852047 - 62855441 [-] on Build GRCh38 100
GenBankmRNA HY048030.1 - 9 - 10 454 Chr. 11 - 62852631 - 62855947 [-] on Build GRCh38 100
GenBankmRNA BI260697.1 - 8 - 9 382 Chr. 11 - 62852486 - 62855464 [-] on Build GRCh38 100
GenBankmRNA BM771178.1 - 9 - 10 390 Chr. 11 - 62852441 - 62855883 [-] on Build GRCh38 100
GenBankmRNA AL565570.3 - 2 - 3 Chr. 11 - 62852008 - 62853930 [+] on Build GRCh38 100
GenBankmRNA CU444389.1 - 5 - 6 227 Chr. 11 - 62852229 - 62854557 [-] on Build GRCh38 100
GenBankmRNA CU454623.1 - 2 - 3 Chr. 11 - 62852021 - 62853117 [+] on Build GRCh38 100
GenBankmRNA BM753954.1 - 9 - 10 393 Chr. 11 - 62852631 - 62855885 [-] on Build GRCh38 100
GenBankmRNA BF917912.1 - 5 - 6 202 Chr. 11 - 62852472 - 62854556 [-] on Build GRCh38 100
GenBankmRNA BX091505.1 - 8 - 9 365 Chr. 11 - 62852395 - 62855460 [-] on Build GRCh38 100
GenBankmRNA CU456351.1 - 5 - 6 227 Chr. 11 - 62852224 - 62854557 [-] on Build GRCh38 100
GenBankmRNA CF456049.1 - 8 - 9 398 Chr. 11 - 62852298 - 62855460 [-] on Build GRCh38 100
GenBankmRNA AL514896.3 - 8 - 9 349 Chr. 11 - 62852158 - 62855444 [-] on Build GRCh38 100
GenBankmRNA BI060167.1 - 2 - 3 92 Chr. 11 - 62852354 - 62853592 [-] on Build GRCh38 100
GenBankmRNA BG681844.1 - 8 - 9 366 Chr. 11 - 62852264 - 62855451 [-] on Build GRCh38 100
GenBankmRNA BU553089.1 - 7 - 8 581 Chr. 11 - 62852439 - 62855467 [-] on Build GRCh38 100
GenBankmRNA BM789697.1 - 5 - 6 184 Chr. 11 - 62852240 - 62854542 [-] on Build GRCh38 100
GenBankmRNA AL555120.3 - 8 - 9 371 Chr. 11 - 62852324 - 62855466 [-] on Build GRCh38 100
GenBankmRNA CU444332.1 - 2 - 3 Chr. 11 - 62852021 - 62853579 [+] on Build GRCh38 100
GenBankmRNA HY109978.1 - 9 - 10 389 Chr. 11 - 62852554 - 62855882 [-] on Build GRCh38 100
GenBankmRNA BQ637146.1 - 8 - 9 375 Chr. 11 - 62852445 - 62855467 [-] on Build GRCh38 100
GenBankmRNA BM770682.1 - 4 - 5 161 Chr. 11 - 62852462 - 62854064 [-] on Build GRCh38 100
GenBankmRNA CN386568.1 - 8 - 9 382 Chr. 11 - 62852447 - 62855466 [-] on Build GRCh38 100
GenBankmRNA BM845735.1 - 8 - 9 342 Chr. 11 - 62852642 - 62855880 [-] on Build GRCh38 100
GenBankmRNA BE886647.1 - 2 - 3 186 Chr. 11 - 62852081 - 62853696 [-] on Build GRCh38 100
GenBankmRNA BF803404.1 - 2 - 3 Chr. 11 - 62852251 - 62853117 [+] on Build GRCh38 100
GenBankmRNA BM753151.1 - 9 - 10 393 Chr. 11 - 62852628 - 62855885 [-] on Build GRCh38 100
GenBankmRNA BM765264.1 - 9 - 10 392 Chr. 11 - 62852483 - 62855885 [-] on Build GRCh38 100
GenBankmRNA BY996166.1 - 8 - 9 383 Chr. 11 - 62852414 - 62855467 [-] on Build GRCh38 100
GenBankmRNA BM743536.1 - 6 - 7 258 Chr. 11 - 62852509 - 62854943 [-] on Build GRCh38 100
GenBankmRNA BU196426.1 - 387 Chr. - - [-] on Build 100
GenBankmRNA BM739328.1 - 4 - 5 161 Chr. 11 - 62852452 - 62854064 [-] on Build GRCh38 100
GenBankmRNA CN386539.1 - 8 - 9 366 Chr. 11 - 62852439 - 62855457 [-] on Build GRCh38 100
GenBankmRNA BX341807.2 - 8 - 9 372 Chr. 11 - 62852048 - 62855467 [-] on Build GRCh38 100
GenBankmRNA BM805243.1 - 6 - 7 235 Chr. 11 - 62851996 - 62855166 [-] on Build GRCh38 100
GenBankmRNA CN386543.1 - 8 - 9 365 Chr. 11 - 62852444 - 62855460 [-] on Build GRCh38 100
GenBankmRNA BF132715.1 - 372 Chr. - - [-] on Build 100
GenBankmRNA BE744456.1 - Chr. - - [-] on Build 96
GenBankmRNA CB268843.1 - 7 - 8 277 Chr. 11 - 62852419 - 62855165 [-] on Build GRCh38 100
GenBankmRNA CK826165.1 - 8 - 9 509 Chr. 11 - 62852643 - 62855599 [-] on Build GRCh38 100
GenBankmRNA CU445308.1 - 5 - 6 227 Chr. 11 - 62852189 - 62854557 [-] on Build GRCh38 100
GenBankmRNA CN386547.1 - 8 - 9 370 Chr. 11 - 62852444 - 62855460 [-] on Build GRCh38 100
GenBankmRNA BI255546.1 - 8 - 9 377 Chr. 11 - 62852267 - 62855462 [-] on Build GRCh38 100
GenBankmRNA BM824508.1 - 1 - 2 42 Chr. 11 - 62852285 - 62853116 [-] on Build GRCh38 100
GenBankmRNA BQ477769.1 - 8 - 9 509 Chr. 11 - 62852646 - 62855599 [-] on Build GRCh38 100
GenBankmRNA CN386552.1 - 8 - 9 365 Chr. 11 - 62852374 - 62855460 [-] on Build GRCh38 100
GenBankmRNA BU168780.1 - 8 - 9 387 Chr. 11 - 62852268 - 62855483 [-] on Build GRCh38 100
GenBankmRNA BM766186.1 - 9 - 10 392 Chr. 11 - 62852453 - 62855885 [-] on Build GRCh38 100
GenBankmRNA W21481.1 - 165 Chr. - - [-] on Build 100
GenBankmRNA CN386556.1 - 7 - 8 549 Chr. 11 - 62852481 - 62855460 [-] on Build GRCh38 100
GenBankmRNA CU451952.1 - 5 - 6 227 Chr. 11 - 62852204 - 62854559 [-] on Build GRCh38 100
GenBankmRNA L36587.3 - 8 - 9 635 Chr. 11 - 62851989 - 62855730 [-] on Build GRCh38 100
GenBankmRNA DA380033.1 - 9 - 10 389 Chr. 11 - 62852545 - 62855882 [-] on Build GRCh38 100
GenBankmRNA BG179164.1 - 3 - 4 123 Chr. 11 - 62852130 - 62853835 [-] on Build GRCh38 100
GenBankmRNA AA401593.1 - 8 - 9 350 Chr. 11 - 62852604 - 62855445 [-] on Build GRCh38 100
GenBankmRNA BI768992.1 - 8 - 9 366 Chr. 11 - 62852281 - 62855460 [-] on Build GRCh38 100
GenBankmRNA CR992196.1 - 8 - 9 379 Chr. 11 - 62852199 - 62855467 [-] on Build GRCh38 100
GenBankmRNA CN386564.1 - 7 - 8 561 Chr. 11 - 62852567 - 62855460 [-] on Build GRCh38 100
GenBankmRNA BM765544.1 - 9 - 10 392 Chr. 11 - 62852615 - 62855885 [-] on Build GRCh38 100


Adjacent Gene Details

Gene Name Gene Symbol Alias Distance Relative Direction Location Chromosome
Upstream WD repeat domain 74 WDR74 -11.0kb Sense Chr. - 62832905 - 62841809 on Build GRCh38
Downstream small nucleolar RNA, C/D box 31 SNORD31 RNU31, SNORD31A, U31 211.0 Sense Chr. - 62853326 - 62853393 on Build GRCh38

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